Variant report

Variant	rs28448676
Chromosome Location	chr16:71574511-71574512
allele	A/C/G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 19 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:17)

rs_ID	r²[population]
rs13331092	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs13335958	1.00[AMR][1000 genomes]
rs13338592	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs13338643	0.83[AMR][1000 genomes]
rs13339359	0.83[AMR][1000 genomes]
rs16973227	1.00[AMR][1000 genomes]
rs28436693	1.00[AMR][1000 genomes]
rs59475931	0.84[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73584836	1.00[AMR][1000 genomes]
rs73589850	1.00[AMR][1000 genomes]
rs8053156	0.83[AMR][1000 genomes]
rs8060811	1.00[AMR][1000 genomes]
rs9921203	0.83[AMR][1000 genomes]
rs9926624	0.83[AMR][1000 genomes]
rs9927547	1.00[AMR][1000 genomes]
rs9927810	1.00[AMR][1000 genomes]
rs9940830	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv949461	chr16:71196153-71579711	ZNF genes & repeats Enhancers Weak transcription Genic enhancers Bivalent/Poised TSS Active TSS Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Strong transcription Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	41 gene(s)	inside rSNPs	diseases
2	esv3347477	chr16:71555148-71985177	Weak transcription Active TSS Flanking Active TSS Strong transcription Enhancers Bivalent/Poised TSS Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	56 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:5 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr16:71560600-71583400	Weak transcription	Pancreas	Pancrea
2	chr16:71561000-71582400	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
3	chr16:71561200-71576400	Weak transcription	HUES48 Cell Line	embryonic stem cell
4	chr16:71574400-71575400	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
5	chr16:71574400-71576200	Weak transcription	iPS-15b Cell Line	embryonic stem cell

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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