Variant report

Variant	rs13338643
Chromosome Location	chr16:71585844-71585845
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 18 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:17)

rs_ID	r²[population]
rs13331092	0.83[AMR][1000 genomes]
rs13335958	0.83[AMR][1000 genomes]
rs13338592	0.83[AMR][1000 genomes]
rs13338868	0.85[AFR][1000 genomes]
rs13339247	0.87[AFR][1000 genomes]
rs16973227	0.83[AMR][1000 genomes]
rs28436693	0.83[AMR][1000 genomes]
rs28448676	0.83[AMR][1000 genomes]
rs59475931	0.83[AMR][1000 genomes]
rs73584836	0.83[AMR][1000 genomes]
rs73584838	0.86[AFR][1000 genomes];0.85[AMR][1000 genomes]
rs73584840	0.86[AFR][1000 genomes];0.85[AMR][1000 genomes]
rs73589850	0.83[AMR][1000 genomes]
rs8060811	0.83[AMR][1000 genomes]
rs9927547	0.83[AMR][1000 genomes]
rs9927810	0.83[AMR][1000 genomes]
rs9940830	0.83[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3347477	chr16:71555148-71985177	Weak transcription Active TSS Flanking Active TSS Strong transcription Enhancers Bivalent/Poised TSS Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	56 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr16:71583200-71587000	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
2	chr16:71585600-71591400	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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