Variant report
| Variant | rs73584840 |
|---|---|
| Chromosome Location | chr16:71581863-71581864 |
| allele | A/G |
| Outlinks | Ensembl UCSC |
- TF binding region (count:1)
- CpG islands (count:0)
- Chromatin interactive region (count:1)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
(count:1 , 50 per page) page:
1
| No data |
(count:1 , 50 per page) page:
1
| No. | Distal block | Cell Line | Cell type | Cell Stage |
|---|---|---|---|---|
| 1 | chr16:71577968..71579525-chr16:71580286..71582908,2 | K562 | blood: |
| No data |
| No data |
| No data |
| Variant related genes | Relation type |
|---|---|
| ZNF19 | TF binding region |
rSNPs within LD-proxies of this variant (count:24)
| rs_ID | r2[population] |
|---|---|
| rs11488925 | 1.00[EUR][1000 genomes] |
| rs13330482 | 1.00[EUR][1000 genomes] |
| rs13331393 | 1.00[EUR][1000 genomes] |
| rs13337136 | 1.00[EUR][1000 genomes] |
| rs13338643 | 0.86[AFR][1000 genomes];0.85[AMR][1000 genomes] |
| rs13339247 | 0.90[AFR][1000 genomes];0.85[AMR][1000 genomes];1.00[EUR][1000 genomes] |
| rs16972708 | 1.00[EUR][1000 genomes] |
| rs16973325 | 1.00[EUR][1000 genomes] |
| rs16973352 | 1.00[EUR][1000 genomes] |
| rs16973364 | 1.00[EUR][1000 genomes] |
| rs28455032 | 1.00[EUR][1000 genomes] |
| rs28693064 | 0.91[AFR][1000 genomes];1.00[EUR][1000 genomes] |
| rs58909593 | 1.00[EUR][1000 genomes] |
| rs59258436 | 1.00[EUR][1000 genomes] |
| rs6499524 | 0.86[AFR][1000 genomes];1.00[EUR][1000 genomes] |
| rs7201912 | 1.00[EUR][1000 genomes] |
| rs73571723 | 1.00[EUR][1000 genomes] |
| rs73584838 | 1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes] |
| rs74025967 | 1.00[EUR][1000 genomes] |
| rs8051528 | 1.00[EUR][1000 genomes] |
| rs9921203 | 0.85[AMR][1000 genomes];1.00[EUR][1000 genomes] |
| rs9927182 | 0.91[AFR][1000 genomes];1.00[EUR][1000 genomes] |
| rs9931828 | 1.00[EUR][1000 genomes] |
| rs9939332 | 1.00[EUR][1000 genomes] |
Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page:
1
| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | esv3347477 | chr16:71555148-71985177 | Weak transcription Active TSS Flanking Active TSS Strong transcription Enhancers Bivalent/Poised TSS Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3' | TF binding regionCpG islandChromatin interactive regionlncRNAmiRNA target site | 56 gene(s) | inside rSNPs | diseases |
| No data |
| No. | Chromosome Location | Chromatin state | Cell line | Tissue |
|---|---|---|---|---|
| 1 | chr16:71560600-71583400 | Weak transcription | Pancreas | Pancrea |
| 2 | chr16:71561000-71582400 | Weak transcription | H9 Derived Neuron Cultured Cells | ES cell derived |
