Variant report

No.	Distal block	Cell Line	Cell type
1	chr16:71586592..71587218-chr16:71644906..71645667,2	MCF-7	breast:
2	chr16:71585545..71588082-chr16:71597771..71600416,3	MCF-7	breast:
3	chr16:71586169..71589028-chr16:71589798..71592589,2	K562	blood:

Variant related genes	Relation type
ENSG00000157429	Chromatin interaction
ENSG00000260886	Chromatin interaction

rSNPs within LD-proxies of this variant (count:25)

rs_ID	r²[population]
rs11488925	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs13330482	0.85[AFR][1000 genomes];0.91[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs13331393	0.85[AFR][1000 genomes];0.91[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs13337136	0.87[AFR][1000 genomes];0.91[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs13339247	1.00[EUR][1000 genomes]
rs16972708	1.00[EUR][1000 genomes]
rs16973352	0.86[LWK][hapmap];0.85[AFR][1000 genomes];0.91[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs16973357	0.82[AFR][1000 genomes];0.82[AMR][1000 genomes]
rs16973364	0.81[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs28455032	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs28693064	1.00[EUR][1000 genomes]
rs58909593	1.00[EUR][1000 genomes]
rs59258436	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs6499524	1.00[EUR][1000 genomes]
rs7201912	0.81[AFR][1000 genomes];0.82[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73571723	1.00[EUR][1000 genomes]
rs73584838	1.00[EUR][1000 genomes]
rs73584840	1.00[EUR][1000 genomes]
rs74025967	1.00[EUR][1000 genomes]
rs8051528	0.85[AFR][1000 genomes];0.91[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs9921203	1.00[EUR][1000 genomes]
rs9927182	1.00[EUR][1000 genomes]
rs9931828	0.81[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs9932769	0.82[AFR][1000 genomes]
rs9939332	0.86[AFR][1000 genomes];0.91[AMR][1000 genomes];1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3347477	chr16:71555148-71985177	Weak transcription Active TSS Flanking Active TSS Strong transcription Enhancers Bivalent/Poised TSS Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	56 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:6 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr16:71585600-71591400	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
2	chr16:71586600-71587400	Enhancers	HepG2	liver
3	chr16:71586800-71587400	Enhancers	Monocytes-CD14+_RO01746	blood
4	chr16:71587000-71587200	ZNF genes & repeats	H9 Derived Neuron Cultured Cells	ES cell derived
5	chr16:71587000-71587200	Enhancers	Fetal Intestine Small	intestine
6	chr16:71587000-71598000	Weak transcription	Brain Anterior Caudate	brain

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