Variant report

Variant	rs16973357
Chromosome Location	chr16:71624907-71624908
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 16 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:14)

rs_ID	r²[population]
rs11488925	0.84[AFR][1000 genomes];0.82[AMR][1000 genomes]
rs13330482	0.81[AFR][1000 genomes]
rs13331393	0.81[AFR][1000 genomes]
rs13337136	0.84[AFR][1000 genomes]
rs16973325	0.82[AFR][1000 genomes];0.82[AMR][1000 genomes]
rs16973352	0.82[AFR][1000 genomes]
rs16973364	1.00[YRI][hapmap];0.93[AFR][1000 genomes];0.81[AMR][1000 genomes]
rs28455032	0.84[AFR][1000 genomes];0.82[AMR][1000 genomes]
rs59258436	0.84[AFR][1000 genomes];0.82[AMR][1000 genomes]
rs8044269	0.92[AFR][1000 genomes]
rs8045236	0.90[AFR][1000 genomes]
rs8051528	0.82[AFR][1000 genomes]
rs9931828	0.96[AFR][1000 genomes];0.81[AMR][1000 genomes]
rs9932769	1.00[YRI][hapmap];0.98[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3347477	chr16:71555148-71985177	Weak transcription Active TSS Flanking Active TSS Strong transcription Enhancers Bivalent/Poised TSS Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	56 gene(s)	inside rSNPs	diseases
2	nsv1063338	chr16:71612346-71752968	Enhancers Strong transcription Weak transcription Active TSS Flanking Active TSS Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3' Genic enhancers Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	16 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:3 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr16:71624200-71627000	Enhancers	Liver	Liver
2	chr16:71624200-71627200	Enhancers	HepG2	liver
3	chr16:71624400-71625000	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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