Variant report

No.	Distal block	Cell Line	Cell type
1	chr16:71598309..71602014-chr16:71617884..71620919,3	MCF-7	breast:
2	chr16:71617743..71620944-chr16:71623510..71629650,6	MCF-7	breast:
3	chr16:71614150..71615794-chr16:71617796..71620748,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000260886	Chromatin interaction
ENSG00000157429	Chromatin interaction

rSNPs within LD-proxies of this variant (count:25)

rs_ID	r²[population]
rs11488925	0.88[AFR][1000 genomes];0.91[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs13330482	0.87[AFR][1000 genomes];0.83[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs13331393	0.87[AFR][1000 genomes];0.83[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs13337136	0.89[AFR][1000 genomes];0.83[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs13339247	1.00[EUR][1000 genomes]
rs16972708	1.00[EUR][1000 genomes]
rs16973325	0.85[AFR][1000 genomes];0.91[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs16973352	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs16973357	0.82[AFR][1000 genomes]
rs16973364	1.00[EUR][1000 genomes]
rs28455032	0.88[AFR][1000 genomes];0.91[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs28693064	1.00[EUR][1000 genomes]
rs58909593	1.00[EUR][1000 genomes]
rs59258436	0.88[AFR][1000 genomes];0.91[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs6499524	1.00[EUR][1000 genomes]
rs7201912	0.94[AFR][1000 genomes];0.91[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73571723	1.00[EUR][1000 genomes]
rs73584838	1.00[EUR][1000 genomes]
rs73584840	1.00[EUR][1000 genomes]
rs74025967	1.00[EUR][1000 genomes]
rs9921203	1.00[EUR][1000 genomes]
rs9927182	1.00[EUR][1000 genomes]
rs9931828	0.80[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs9932769	0.82[AFR][1000 genomes]
rs9939332	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3347477	chr16:71555148-71985177	Weak transcription Active TSS Flanking Active TSS Strong transcription Enhancers Bivalent/Poised TSS Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	56 gene(s)	inside rSNPs	diseases
2	nsv1063338	chr16:71612346-71752968	Enhancers Strong transcription Weak transcription Active TSS Flanking Active TSS Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3' Genic enhancers Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	16 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:4 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr16:71615800-71619000	Weak transcription	A549	lung
2	chr16:71618400-71619000	Enhancers	Liver	Liver
3	chr16:71618400-71619200	Enhancers	Pancreatic Islets	Pancreatic Islet
4	chr16:71618600-71619400	Flanking Active TSS	HepG2	liver

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