Variant report
| Variant | rs58909593 |
|---|---|
| Chromosome Location | chr16:71635839-71635840 |
| allele | A/C |
| Outlinks | Ensembl UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:1)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
| No data |
| No data |
(count:1 , 50 per page) page:
1
| No. | Distal block | Cell Line | Cell type | Cell Stage |
|---|---|---|---|---|
| 1 | chr16:71634121..71636611-chr16:71640952..71642935,2 | MCF-7 | breast: |
| No data |
| No data |
| No data |
| No data |
rSNPs within LD-proxies of this variant (count:23)
| rs_ID | r2[population] |
|---|---|
| rs11488925 | 1.00[EUR][1000 genomes] |
| rs13330482 | 1.00[EUR][1000 genomes] |
| rs13331393 | 1.00[EUR][1000 genomes] |
| rs13337136 | 1.00[EUR][1000 genomes] |
| rs13339247 | 1.00[EUR][1000 genomes] |
| rs16972708 | 1.00[EUR][1000 genomes] |
| rs16973325 | 1.00[EUR][1000 genomes] |
| rs16973352 | 1.00[EUR][1000 genomes] |
| rs16973364 | 1.00[EUR][1000 genomes] |
| rs28455032 | 1.00[EUR][1000 genomes] |
| rs28693064 | 1.00[EUR][1000 genomes] |
| rs59258436 | 1.00[EUR][1000 genomes] |
| rs6499524 | 1.00[EUR][1000 genomes] |
| rs7201912 | 1.00[EUR][1000 genomes] |
| rs73571723 | 1.00[EUR][1000 genomes] |
| rs73584838 | 1.00[EUR][1000 genomes] |
| rs73584840 | 1.00[EUR][1000 genomes] |
| rs74025967 | 1.00[EUR][1000 genomes] |
| rs8051528 | 1.00[EUR][1000 genomes] |
| rs9921203 | 1.00[EUR][1000 genomes] |
| rs9927182 | 1.00[EUR][1000 genomes] |
| rs9931828 | 1.00[EUR][1000 genomes] |
| rs9939332 | 1.00[EUR][1000 genomes] |
Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page:
1
| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | esv3347477 | chr16:71555148-71985177 | Weak transcription Active TSS Flanking Active TSS Strong transcription Enhancers Bivalent/Poised TSS Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3' | TF binding regionCpG islandChromatin interactive regionlncRNAmiRNA target site | 56 gene(s) | inside rSNPs | diseases |
| 2 | nsv1063338 | chr16:71612346-71752968 | Enhancers Strong transcription Weak transcription Active TSS Flanking Active TSS Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3' Genic enhancers Flanking Bivalent TSS/Enh ZNF genes & repeats | TF binding regionCpG islandChromatin interactive regionlncRNAmiRNA target site | 16 gene(s) | inside rSNPs | diseases |
| 3 | esv3430225 | chr16:71633500-71661205 | Flanking Bivalent TSS/Enh Enhancers Active TSS Bivalent/Poised TSS Bivalent Enhancer Flanking Active TSS Weak transcription Transcr. at gene 5' and 3' | TF binding regionCpG islandChromatin interactive regionlncRNA | 11 gene(s) | inside rSNPs | diseases |
| No data |
| No. | Chromosome Location | Chromatin state | Cell line | Tissue |
|---|---|---|---|---|
| 1 | chr16:71635200-71640600 | Weak transcription | HepG2 | liver |
