Variant report
| Variant | rs16973364 |
|---|---|
| Chromosome Location | chr16:71625880-71625881 |
| allele | G/T |
| Outlinks | Ensembl UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:4)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
| No data |
| No data |
(count:4 , 50 per page) page:
1
| No. | Distal block | Cell Line | Cell type | Cell Stage |
|---|---|---|---|---|
| 1 | chr16:71619005..71622158-chr16:71624497..71628582,3 | MCF-7 | breast: | |
| 2 | chr16:71610910..71613434-chr16:71625307..71628011,2 | MCF-7 | breast: | |
| 3 | chr16:71620059..71623986-chr16:71624555..71628126,4 | K562 | blood: | |
| 4 | chr16:71617743..71620944-chr16:71623510..71629650,6 | MCF-7 | breast: |
| No data |
| No data |
| No data |
| Variant related genes | Relation type |
|---|---|
| ENSG00000198650 | Chromatin interaction |
rSNPs within LD-proxies of this variant (count:27)
| rs_ID | r2[population] |
|---|---|
| rs11488925 | 0.81[AMR][1000 genomes];1.00[EUR][1000 genomes] |
| rs13330482 | 0.90[AMR][1000 genomes];1.00[EUR][1000 genomes] |
| rs13331393 | 0.90[AMR][1000 genomes];1.00[EUR][1000 genomes] |
| rs13337136 | 0.82[AFR][1000 genomes];0.90[AMR][1000 genomes];1.00[EUR][1000 genomes] |
| rs13339247 | 1.00[EUR][1000 genomes] |
| rs16972708 | 1.00[EUR][1000 genomes] |
| rs16973325 | 0.81[AMR][1000 genomes];1.00[EUR][1000 genomes] |
| rs16973352 | 1.00[EUR][1000 genomes] |
| rs16973357 | 1.00[YRI][hapmap];0.93[AFR][1000 genomes];0.81[AMR][1000 genomes] |
| rs28455032 | 0.81[AMR][1000 genomes];1.00[EUR][1000 genomes] |
| rs28693064 | 1.00[EUR][1000 genomes] |
| rs58909593 | 1.00[EUR][1000 genomes] |
| rs59258436 | 0.81[AMR][1000 genomes];1.00[EUR][1000 genomes] |
| rs6499524 | 1.00[EUR][1000 genomes] |
| rs7201912 | 0.81[AMR][1000 genomes];1.00[EUR][1000 genomes] |
| rs73571723 | 1.00[EUR][1000 genomes] |
| rs73584838 | 1.00[EUR][1000 genomes] |
| rs73584840 | 1.00[EUR][1000 genomes] |
| rs74025967 | 1.00[EUR][1000 genomes] |
| rs8044269 | 0.89[AFR][1000 genomes];0.89[AMR][1000 genomes] |
| rs8045236 | 0.87[AFR][1000 genomes];0.89[AMR][1000 genomes] |
| rs8051528 | 1.00[EUR][1000 genomes] |
| rs9921203 | 1.00[EUR][1000 genomes] |
| rs9927182 | 1.00[EUR][1000 genomes] |
| rs9931828 | 0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes] |
| rs9932769 | 1.00[ASW][hapmap];0.97[LWK][hapmap];0.92[MKK][hapmap];1.00[YRI][hapmap];0.95[AFR][1000 genomes] |
| rs9939332 | 1.00[EUR][1000 genomes] |
Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page:
1
| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | esv3347477 | chr16:71555148-71985177 | Weak transcription Active TSS Flanking Active TSS Strong transcription Enhancers Bivalent/Poised TSS Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3' | TF binding regionCpG islandChromatin interactive regionlncRNAmiRNA target site | 56 gene(s) | inside rSNPs | diseases |
| 2 | nsv1063338 | chr16:71612346-71752968 | Enhancers Strong transcription Weak transcription Active TSS Flanking Active TSS Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3' Genic enhancers Flanking Bivalent TSS/Enh ZNF genes & repeats | TF binding regionCpG islandChromatin interactive regionlncRNAmiRNA target site | 16 gene(s) | inside rSNPs | diseases |
| No data |
| No. | Chromosome Location | Chromatin state | Cell line | Tissue |
|---|---|---|---|---|
| 1 | chr16:71624200-71627000 | Enhancers | Liver | Liver |
| 2 | chr16:71624200-71627200 | Enhancers | HepG2 | liver |
