Variant report

Variant	rs8053156
Chromosome Location	chr16:71440156-71440157
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 27 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:26)

rs_ID	r²[population]
rs12102284	0.81[AFR][1000 genomes]
rs13331092	0.83[AMR][1000 genomes]
rs13335958	0.83[AMR][1000 genomes]
rs13338592	0.83[AMR][1000 genomes]
rs16973227	0.83[AMR][1000 genomes]
rs28407180	0.83[AMR][1000 genomes]
rs28436693	0.83[AMR][1000 genomes]
rs28448676	0.83[AMR][1000 genomes]
rs28591533	0.83[AMR][1000 genomes]
rs59475931	0.83[AMR][1000 genomes]
rs60096665	0.85[AMR][1000 genomes]
rs7192486	0.83[AMR][1000 genomes]
rs7206706	0.83[AMR][1000 genomes]
rs73571857	0.83[AMR][1000 genomes]
rs73584836	0.83[AMR][1000 genomes]
rs73589850	0.82[AFR][1000 genomes];0.83[AMR][1000 genomes]
rs74025979	0.85[AMR][1000 genomes]
rs8054267	0.83[AMR][1000 genomes]
rs8055003	0.83[AMR][1000 genomes]
rs8056365	0.83[AMR][1000 genomes]
rs8060811	0.98[AFR][1000 genomes];0.83[AMR][1000 genomes]
rs8063972	0.83[AMR][1000 genomes]
rs9925993	0.83[AMR][1000 genomes]
rs9927547	0.83[AMR][1000 genomes]
rs9927810	0.83[AMR][1000 genomes]
rs9940830	0.83[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv949461	chr16:71196153-71579711	ZNF genes & repeats Enhancers Weak transcription Genic enhancers Bivalent/Poised TSS Active TSS Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Strong transcription Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	41 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:4 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr16:71434800-71446600	Weak transcription	Right Atrium	heart
2	chr16:71436600-71446000	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
3	chr16:71439200-71445800	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
4	chr16:71439800-71441800	Enhancers	Primary T helper 17 cells PMA-I stimulated	--

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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