Variant report

Variant	rs558851054
Chromosome Location	chr17:15610425-15610426
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 11 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:11 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv492304	chr17:15043353-15611753	Active TSS Enhancers Weak transcription Flanking Active TSS Bivalent/Poised TSS Strong transcription Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	58 gene(s)	inside rSNPs	diseases
2	nsv916652	chr17:15093600-15856310	Strong transcription Weak transcription Enhancers Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3' Genic enhancers Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	73 gene(s)	inside rSNPs	diseases
3	nsv1059056	chr17:15294011-15856861	Strong transcription Weak transcription Active TSS Enhancers Flanking Active TSS Genic enhancers Transcr. at gene 5' and 3' Bivalent Enhancer ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	55 gene(s)	inside rSNPs	diseases
4	nsv457695	chr17:15447364-15611495	Active TSS Enhancers Strong transcription Flanking Active TSS Weak transcription Flanking Bivalent TSS/Enh ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	26 gene(s)	inside rSNPs	diseases
5	nsv574462	chr17:15447364-15611495	Active TSS Flanking Active TSS Weak transcription Strong transcription Enhancers ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	26 gene(s)	inside rSNPs	diseases
6	nsv934185	chr17:15552960-16551197	ZNF genes & repeats Enhancers Flanking Active TSS Weak transcription Strong transcription Bivalent Enhancer Bivalent/Poised TSS Genic enhancers Active TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	190 gene(s)	inside rSNPs	diseases
7	nsv520426	chr17:15554561-15647723	Weak transcription Active TSS Enhancers Flanking Active TSS Strong transcription ZNF genes & repeats Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	22 gene(s)	inside rSNPs	diseases
8	nsv1062951	chr17:15561070-15890644	Weak transcription Strong transcription Active TSS ZNF genes & repeats Enhancers Flanking Bivalent TSS/Enh Genic enhancers Flanking Active TSS Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	24 gene(s)	inside rSNPs	diseases
9	nsv1066023	chr17:15607267-16053512	Weak transcription Enhancers Strong transcription Flanking Bivalent TSS/Enh Flanking Active TSS Genic enhancers ZNF genes & repeats Bivalent Enhancer Active TSS Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	49 gene(s)	inside rSNPs	diseases
10	nsv515999	chr17:15608194-15611495	Weak transcription ZNF genes & repeats Strong transcription	TF binding region CpG island	1 gene(s)	inside rSNPs	diseases
11	nsv960059	chr17:15609621-15611056	ZNF genes & repeats Strong transcription Weak transcription	TF binding region CpG island	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:118 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr17:15603400-15610800	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
2	chr17:15603400-15610800	Weak transcription	Adipose Nuclei	Adipose
3	chr17:15603400-15610800	Weak transcription	Psoas Muscle	Psoas
4	chr17:15603400-15610800	Weak transcription	NHLF	lung
5	chr17:15603400-15611000	Weak transcription	Brain Angular Gyrus	brain
6	chr17:15603400-15611000	Weak transcription	Right Ventricle	heart
7	chr17:15603400-15611600	Weak transcription	Brain Inferior Temporal Lobe	brain
8	chr17:15603400-15612000	Weak transcription	Colon Smooth Muscle	Colon
9	chr17:15603400-15616400	Weak transcription	Pancreas	Pancrea
10	chr17:15603600-15611000	Weak transcription	Rectal Mucosa Donor 31	rectum
11	chr17:15603600-15619200	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
12	chr17:15604000-15610800	Weak transcription	Duodenum Mucosa	Duodenum
13	chr17:15604000-15611800	Weak transcription	K562	blood
14	chr17:15604200-15623800	ZNF genes & repeats	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
15	chr17:15604400-15623800	ZNF genes & repeats	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
16	chr17:15604600-15612400	ZNF genes & repeats	H9 Derived Neuron Cultured Cells	ES cell derived
17	chr17:15604800-15623400	Strong transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
18	chr17:15605000-15612200	ZNF genes & repeats	Dnd41	blood
19	chr17:15605800-15610800	Strong transcription	ES-UCSF4 Cell Line	embryonic stem cell
20	chr17:15606200-15612200	Strong transcription	Foreskin Fibroblast Primary Cells skin02	Skin
21	chr17:15606800-15611600	Weak transcription	Fetal Heart	heart
22	chr17:15607000-15623400	ZNF genes & repeats	iPS-20b Cell Line	embryonic stem cell
23	chr17:15607600-15610600	ZNF genes & repeats	Brain Germinal Matrix	brain
24	chr17:15607600-15612400	ZNF genes & repeats	H1 Cell Line	embryonic stem cell
25	chr17:15607600-15612400	ZNF genes & repeats	IMR90 fetal lung fibroblasts Cell Line	lung
26	chr17:15607600-15612400	ZNF genes & repeats	Breast Myoepithelial Primary Cells	Breast
27	chr17:15607600-15612400	ZNF genes & repeats	Cortex derived primary cultured neurospheres	brain
28	chr17:15607600-15612400	Strong transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
29	chr17:15607600-15612400	ZNF genes & repeats	Foreskin Melanocyte Primary Cells skin03	Skin
30	chr17:15608200-15611000	Strong transcription	Duodenum Smooth Muscle	Duodenum
31	chr17:15608200-15612400	ZNF genes & repeats	Primary B cells from cord blood	blood
32	chr17:15608200-15612400	Strong transcription	Foreskin Fibroblast Primary Cells skin01	Skin
33	chr17:15608200-15612400	Strong transcription	Osteobl	bone
34	chr17:15608200-15612600	ZNF genes & repeats	Primary hematopoietic stem cells G-CSF-mobilized Female	--
35	chr17:15608200-15621200	ZNF genes & repeats	Primary hematopoietic stem cells G-CSF-mobilized Male	--
36	chr17:15608400-15611800	Weak transcription	Spleen	Spleen
37	chr17:15608400-15612400	ZNF genes & repeats	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
38	chr17:15608400-15612400	ZNF genes & repeats	Ganglion Eminence derived primary cultured neurospheres	brain
39	chr17:15608400-15613400	ZNF genes & repeats	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
40	chr17:15608400-15616400	Strong transcription	Primary Natural Killer cells fromperipheralblood	blood
41	chr17:15608400-15623800	ZNF genes & repeats	HUES64 Cell Line	embryonic stem cell
42	chr17:15608400-15623800	ZNF genes & repeats	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
43	chr17:15608600-15610800	Weak transcription	Small Intestine	intestine
44	chr17:15608600-15612400	ZNF genes & repeats	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
45	chr17:15608600-15613000	ZNF genes & repeats	Liver	Liver
46	chr17:15608600-15618200	ZNF genes & repeats	HUES48 Cell Line	embryonic stem cell
47	chr17:15609000-15610800	Weak transcription	Primary B cells from peripheral blood	blood
48	chr17:15609000-15611000	Strong transcription	Primary T helper cells PMA-I stimulated	--
49	chr17:15609000-15612200	ZNF genes & repeats	GM12878-XiMat	blood
50	chr17:15609000-15612400	ZNF genes & repeats	ES-WA7 Cell Line	embryonic stem cell

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