Variant report

Variant	rs55894517
Chromosome Location	chr11:127658198-127658199
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 39 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:34)

rs_ID	r²[population]
rs11221046	0.90[AFR][1000 genomes];0.85[AMR][1000 genomes]
rs56036063	0.87[AFR][1000 genomes]
rs56223098	0.90[AFR][1000 genomes];0.85[AMR][1000 genomes]
rs56246027	0.90[AFR][1000 genomes];0.85[AMR][1000 genomes]
rs60003205	0.90[AFR][1000 genomes];0.85[AMR][1000 genomes]
rs61457629	0.90[AFR][1000 genomes];0.85[AMR][1000 genomes]
rs7123464	0.90[AFR][1000 genomes];0.85[AMR][1000 genomes]
rs73576411	0.84[AFR][1000 genomes];0.85[AMR][1000 genomes]
rs73576415	0.90[AFR][1000 genomes];0.85[AMR][1000 genomes]
rs73576417	0.90[AFR][1000 genomes];0.85[AMR][1000 genomes]
rs73576418	0.90[AFR][1000 genomes];0.85[AMR][1000 genomes]
rs73576421	0.90[AFR][1000 genomes];0.85[AMR][1000 genomes]
rs73576426	0.90[AFR][1000 genomes];0.85[AMR][1000 genomes]
rs73576431	0.90[AFR][1000 genomes];0.85[AMR][1000 genomes]
rs73576440	0.88[AFR][1000 genomes];0.85[AMR][1000 genomes]
rs73576444	0.90[AFR][1000 genomes];0.85[AMR][1000 genomes]
rs73576445	0.90[AFR][1000 genomes];0.85[AMR][1000 genomes]
rs73576447	0.90[AFR][1000 genomes];0.85[AMR][1000 genomes]
rs73576449	0.90[AFR][1000 genomes];0.85[AMR][1000 genomes]
rs73576462	0.85[AFR][1000 genomes];0.85[AMR][1000 genomes]
rs73576469	0.90[AFR][1000 genomes];0.85[AMR][1000 genomes]
rs7927760	0.88[AFR][1000 genomes];0.85[AMR][1000 genomes]
rs7927819	0.88[AFR][1000 genomes];0.85[AMR][1000 genomes]
rs7928018	0.89[AFR][1000 genomes];0.85[AMR][1000 genomes]
rs7928076	0.83[AFR][1000 genomes];0.85[AMR][1000 genomes]
rs7936600	0.90[AFR][1000 genomes];0.85[AMR][1000 genomes]
rs7939878	0.90[AFR][1000 genomes];0.85[AMR][1000 genomes]
rs7940398	0.90[AFR][1000 genomes];0.85[AMR][1000 genomes]
rs7948221	0.90[AFR][1000 genomes];0.85[AMR][1000 genomes]
rs7948464	0.90[AFR][1000 genomes];0.85[AMR][1000 genomes]
rs7948500	0.90[AFR][1000 genomes];0.85[AMR][1000 genomes]
rs7948732	0.90[AFR][1000 genomes];0.85[AMR][1000 genomes]
rs7949038	0.90[AFR][1000 genomes];0.85[AMR][1000 genomes]
rs7951659	0.90[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv898445	chr11:127377733-127713173	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
2	nsv1037485	chr11:127582314-128301106	Enhancers Weak transcription Genic enhancers Flanking Active TSS ZNF genes & repeats Active TSS Bivalent Enhancer Strong transcription Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
3	esv1818193	chr11:127623438-127663921	Enhancers ZNF genes & repeats Weak transcription Flanking Active TSS Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases
4	esv1822544	chr11:127631883-127658538	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS	n/a	n/a	inside rSNPs	diseases
5	nsv556535	chr11:127656196-127737929	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:127652800-127660000	Weak transcription	ES-I3 Cell Line	embryonic stem cell
2	chr11:127655000-127660000	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived

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