Variant report

Variant	rs61457629
Chromosome Location	chr11:127660529-127660530
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr11:127658803..127660673-chr11:127663935..127666199,2	MCF-7	breast:

Extended variants
information (count: 41 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:37)

rs_ID	r²[population]
rs11221043	0.82[AFR][1000 genomes]
rs11221046	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs55894517	0.90[AFR][1000 genomes];0.85[AMR][1000 genomes]
rs56036063	0.97[AFR][1000 genomes]
rs56223098	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs56246027	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs60003205	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs60230966	0.82[AFR][1000 genomes];0.85[AMR][1000 genomes]
rs7123464	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73576411	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73576415	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73576417	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73576418	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73576421	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73576426	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73576431	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73576440	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73576444	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73576445	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73576447	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73576449	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73576462	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73576469	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7927760	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7927819	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7928018	0.99[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7928076	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7936378	0.84[AFR][1000 genomes];0.83[AMR][1000 genomes]
rs7936600	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7939878	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7940398	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7948221	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7948464	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7948500	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7948732	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7949038	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7951659	1.00[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv898445	chr11:127377733-127713173	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
2	nsv1037485	chr11:127582314-128301106	Enhancers Weak transcription Genic enhancers Flanking Active TSS ZNF genes & repeats Active TSS Bivalent Enhancer Strong transcription Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
3	esv1818193	chr11:127623438-127663921	Enhancers ZNF genes & repeats Weak transcription Flanking Active TSS Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases
4	nsv556535	chr11:127656196-127737929	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:13 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:127659800-127660800	Enhancers	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
2	chr11:127660000-127660600	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
3	chr11:127660000-127660600	Enhancers	HUES48 Cell Line	embryonic stem cell
4	chr11:127660000-127660800	Enhancers	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
5	chr11:127660000-127660800	Enhancers	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
6	chr11:127660000-127660800	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
7	chr11:127660000-127661400	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
8	chr11:127660200-127660600	Enhancers	H9 Cell Line	embryonic stem cell
9	chr11:127660400-127660600	Enhancers	HUES6 Cell Line	embryonic stem cell
10	chr11:127660400-127661600	Weak transcription	iPS-18 Cell Line	embryonic stem cell
11	chr11:127660400-127664800	Weak transcription	ES-I3 Cell Line	embryonic stem cell
12	chr11:127660400-127664800	Weak transcription	HUES64 Cell Line	embryonic stem cell
13	chr11:127660400-127664800	Weak transcription	iPS-20b Cell Line	embryonic stem cell

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