Variant report

Variant	rs73576462
Chromosome Location	chr11:127658829-127658830
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr11:127658803..127660673-chr11:127663935..127666199,2	MCF-7	breast:

Extended variants
information (count: 40 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:36)

rs_ID	r²[population]
rs11221046	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs55894517	0.85[AFR][1000 genomes];0.85[AMR][1000 genomes]
rs56036063	0.90[AFR][1000 genomes]
rs56223098	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs56246027	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs60003205	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs60230966	0.85[AMR][1000 genomes]
rs61457629	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7123464	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73576411	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73576415	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73576417	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73576418	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73576421	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73576426	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73576431	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73576440	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73576444	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73576445	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73576447	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73576449	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73576469	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7927760	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7927819	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7928018	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7928076	0.85[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7936378	0.89[AFR][1000 genomes];0.83[AMR][1000 genomes]
rs7936600	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7939878	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7940398	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7948221	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7948464	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7948500	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7948732	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7949038	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7951659	0.94[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv898445	chr11:127377733-127713173	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
2	nsv1037485	chr11:127582314-128301106	Enhancers Weak transcription Genic enhancers Flanking Active TSS ZNF genes & repeats Active TSS Bivalent Enhancer Strong transcription Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
3	esv1818193	chr11:127623438-127663921	Enhancers ZNF genes & repeats Weak transcription Flanking Active TSS Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases
4	nsv556535	chr11:127656196-127737929	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:127652800-127660000	Weak transcription	ES-I3 Cell Line	embryonic stem cell
2	chr11:127655000-127660000	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived

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