Variant report

Variant	rs55900088
Chromosome Location	chr2:21116973-21116974
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 10 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:8)

rs_ID	r²[population]
rs10175633	0.91[AFR][1000 genomes]
rs56164002	0.83[AMR][1000 genomes]
rs73918003	0.83[AMR][1000 genomes]
rs73921326	0.83[AMR][1000 genomes]
rs73921332	0.83[AMR][1000 genomes]
rs73921339	0.83[AMR][1000 genomes]
rs73921340	0.83[AMR][1000 genomes]
rs7594128	0.83[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv455841	chr2:21086693-21135577	Enhancers Flanking Active TSS ZNF genes & repeats Weak transcription Flanking Bivalent TSS/Enh Bivalent Enhancer Active TSS	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases
2	nsv581168	chr2:21086693-21135577	Enhancers ZNF genes & repeats Weak transcription Flanking Active TSS Bivalent Enhancer Active TSS Flanking Bivalent TSS/Enh	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases

No data

Chromatin state (count:31 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:21114200-21127800	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
2	chr2:21115200-21120000	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
3	chr2:21115400-21117800	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
4	chr2:21115400-21118000	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
5	chr2:21115400-21119800	Enhancers	Breast Myoepithelial Primary Cells	Breast
6	chr2:21115400-21120200	Enhancers	H1 Derived Mesenchymal Stem Cells	ES cell derived
7	chr2:21116200-21118600	Enhancers	NHLF	lung
8	chr2:21116200-21118800	Enhancers	NHEK	skin
9	chr2:21116400-21117000	Enhancers	Osteobl	bone
10	chr2:21116400-21117200	Enhancers	Stomach Smooth Muscle	stomach
11	chr2:21116400-21117600	Enhancers	Colon Smooth Muscle	Colon
12	chr2:21116400-21118400	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
13	chr2:21116400-21118600	Enhancers	Muscle Satellite Cultured Cells	--
14	chr2:21116400-21118600	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
15	chr2:21116400-21119800	Enhancers	Fetal Thymus	thymus
16	chr2:21116600-21117000	Enhancers	Esophagus	oesophagus
17	chr2:21116600-21117200	Enhancers	Stomach Mucosa	stomach
18	chr2:21116600-21117400	Enhancers	Pancreas	Pancrea
19	chr2:21116600-21118000	Enhancers	Fetal Muscle Leg	muscle
20	chr2:21116600-21118400	Enhancers	HMEC	breast
21	chr2:21116600-21118800	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
22	chr2:21116600-21118800	Enhancers	Foreskin Fibroblast Primary Cells skin02	Skin
23	chr2:21116800-21117200	Flanking Bivalent TSS/Enh	HepG2	liver
24	chr2:21116800-21117400	Enhancers	Brain Cingulate Gyrus	brain
25	chr2:21116800-21117400	Enhancers	Lung	lung
26	chr2:21116800-21117400	Bivalent Enhancer	Skeletal Muscle Male	skeletal muscle
27	chr2:21116800-21117400	Enhancers	HSMMtube	muscle
28	chr2:21116800-21117400	Enhancers	NH-A	brain
29	chr2:21116800-21117600	Enhancers	Aorta	Aorta
30	chr2:21116800-21117600	Enhancers	Fetal Lung	lung
31	chr2:21116800-21118800	Bivalent Enhancer	Fetal Muscle Trunk	muscle

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