Variant report

Variant	rs56164002
Chromosome Location	chr2:21139558-21139559
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 14 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:12)

rs_ID	r²[population]
rs55900088	0.83[AMR][1000 genomes]
rs61079625	0.83[AMR][1000 genomes]
rs6747634	0.85[AMR][1000 genomes]
rs73918003	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73918005	0.83[AMR][1000 genomes]
rs73918008	0.83[AMR][1000 genomes]
rs73918011	0.83[AFR][1000 genomes];0.83[AMR][1000 genomes]
rs73921326	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73921332	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73921339	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73921340	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7594128	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv455852	chr2:21125742-21143329	Enhancers Weak transcription ZNF genes & repeats Active TSS Bivalent Enhancer Flanking Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases
2	nsv581169	chr2:21125742-21143329	Enhancers Weak transcription Active TSS ZNF genes & repeats Bivalent Enhancer Flanking Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:6 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:21133400-21149400	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
2	chr2:21139200-21141400	Enhancers	Colon Smooth Muscle	Colon
3	chr2:21139400-21141000	Enhancers	Fetal Adrenal Gland	Adrenal Gland
4	chr2:21139400-21141400	Enhancers	Ovary	ovary
5	chr2:21139400-21141400	Enhancers	Rectal Smooth Muscle	rectum
6	chr2:21139400-21141600	Enhancers	Fetal Kidney	kidney

Quick Search:

Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

what's new

Quick links