Variant report

Variant	rs7594128
Chromosome Location	chr2:21130034-21130035
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 16 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:12)

rs_ID	r²[population]
rs55900088	0.83[AMR][1000 genomes]
rs56164002	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs61079625	0.82[AFR][1000 genomes];0.83[AMR][1000 genomes]
rs6747634	0.85[AMR][1000 genomes]
rs73918003	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73918005	0.82[AFR][1000 genomes];0.83[AMR][1000 genomes]
rs73918008	0.82[AFR][1000 genomes];0.83[AMR][1000 genomes]
rs73918011	0.83[AMR][1000 genomes]
rs73921326	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73921332	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73921339	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73921340	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv455841	chr2:21086693-21135577	Enhancers Flanking Active TSS ZNF genes & repeats Weak transcription Flanking Bivalent TSS/Enh Bivalent Enhancer Active TSS	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases
2	nsv581168	chr2:21086693-21135577	Enhancers ZNF genes & repeats Weak transcription Flanking Active TSS Bivalent Enhancer Active TSS Flanking Bivalent TSS/Enh	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases
3	nsv455852	chr2:21125742-21143329	Enhancers Weak transcription ZNF genes & repeats Active TSS Bivalent Enhancer Flanking Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases
4	nsv581169	chr2:21125742-21143329	Enhancers Weak transcription Active TSS ZNF genes & repeats Bivalent Enhancer Flanking Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:6 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:21129600-21133000	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
2	chr2:21129800-21130400	Weak transcription	HepG2	liver
3	chr2:21129800-21133400	Enhancers	H1 Derived Mesenchymal Stem Cells	ES cell derived
4	chr2:21130000-21131600	Enhancers	HMEC	breast
5	chr2:21130000-21131800	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
6	chr2:21130000-21135800	Enhancers	Breast Myoepithelial Primary Cells	Breast

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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