Variant report

Variant	rs6747634
Chromosome Location	chr2:21118156-21118157
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 9 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:7)

rs_ID	r²[population]
rs56164002	0.85[AMR][1000 genomes]
rs73918003	0.85[AMR][1000 genomes]
rs73921326	0.85[AMR][1000 genomes]
rs73921332	0.85[AMR][1000 genomes]
rs73921339	0.85[AMR][1000 genomes]
rs73921340	0.85[AMR][1000 genomes]
rs7594128	0.85[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv455841	chr2:21086693-21135577	Enhancers Flanking Active TSS ZNF genes & repeats Weak transcription Flanking Bivalent TSS/Enh Bivalent Enhancer Active TSS	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases
2	nsv581168	chr2:21086693-21135577	Enhancers ZNF genes & repeats Weak transcription Flanking Active TSS Bivalent Enhancer Active TSS Flanking Bivalent TSS/Enh	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases

No data

Chromatin state (count:23 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:21114200-21127800	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
2	chr2:21115200-21120000	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
3	chr2:21115400-21119800	Enhancers	Breast Myoepithelial Primary Cells	Breast
4	chr2:21115400-21120200	Enhancers	H1 Derived Mesenchymal Stem Cells	ES cell derived
5	chr2:21116200-21118600	Enhancers	NHLF	lung
6	chr2:21116200-21118800	Enhancers	NHEK	skin
7	chr2:21116400-21118400	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
8	chr2:21116400-21118600	Enhancers	Muscle Satellite Cultured Cells	--
9	chr2:21116400-21118600	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
10	chr2:21116400-21119800	Enhancers	Fetal Thymus	thymus
11	chr2:21116600-21118400	Enhancers	HMEC	breast
12	chr2:21116600-21118800	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
13	chr2:21116600-21118800	Enhancers	Foreskin Fibroblast Primary Cells skin02	Skin
14	chr2:21116800-21118800	Bivalent Enhancer	Fetal Muscle Trunk	muscle
15	chr2:21117400-21118400	Weak transcription	Pancreas	Pancrea
16	chr2:21117800-21118200	Flanking Active TSS	Foreskin Keratinocyte Primary Cells skin03	Skin
17	chr2:21117800-21118800	Enhancers	HSMMtube	muscle
18	chr2:21118000-21118200	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
19	chr2:21118000-21118200	Bivalent Enhancer	Fetal Muscle Leg	muscle
20	chr2:21118000-21118200	Enhancers	NH-A	brain
21	chr2:21118000-21118200	Flanking Active TSS	Osteobl	bone
22	chr2:21118000-21118400	Enhancers	Aorta	Aorta
23	chr2:21118000-21118600	Enhancers	HSMM	muscle

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