Variant report

Variant	rs559069616
Chromosome Location	chr15:55655698-55655699
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	POLR2A	chr15:55655520-55656621	K562	blood:	n/a	n/a

Variant related genes	Relation type
CCPG1	TF binding region

Extended variants
information (count: 29 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:29 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv917323	chr15:55290499-56041334	Genic enhancers Active TSS ZNF genes & repeats Weak transcription Strong transcription Enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	57 gene(s)	inside rSNPs	diseases
2	nsv1043789	chr15:55400872-56092454	Weak transcription Enhancers Genic enhancers Strong transcription Flanking Bivalent TSS/Enh Active TSS Bivalent Enhancer Bivalent/Poised TSS Flanking Active TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	55 gene(s)	inside rSNPs	diseases
3	nsv1051046	chr15:55529291-55821973	Weak transcription Active TSS Flanking Active TSS Enhancers Genic enhancers Strong transcription Bivalent/Poised TSS ZNF genes & repeats Bivalent Enhancer Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	36 gene(s)	inside rSNPs	diseases
4	nsv1036173	chr15:55547689-55812194	Flanking Active TSS Active TSS Enhancers Weak transcription Strong transcription Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	36 gene(s)	inside rSNPs	diseases
5	nsv542391	chr15:55547689-55812194	Weak transcription Enhancers Strong transcription ZNF genes & repeats Flanking Active TSS Bivalent/Poised TSS Active TSS Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	36 gene(s)	inside rSNPs	diseases
6	nsv569523	chr15:55555602-55836704	Weak transcription Flanking Active TSS Active TSS Enhancers Strong transcription Bivalent/Poised TSS Genic enhancers ZNF genes & repeats Bivalent Enhancer Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	36 gene(s)	inside rSNPs	diseases
7	nsv1040917	chr15:55562940-55943942	Flanking Active TSS Weak transcription Strong transcription Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Enhancers Genic enhancers Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	38 gene(s)	inside rSNPs	diseases
8	nsv531054	chr15:55571230-55914205	Strong transcription Active TSS Weak transcription Enhancers Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	37 gene(s)	inside rSNPs	diseases
9	nsv904243	chr15:55627528-55734158	Flanking Active TSS Weak transcription Enhancers Strong transcription Active TSS Transcr. at gene 5' and 3' Genic enhancers ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	22 gene(s)	inside rSNPs	diseases
10	nsv948522	chr15:55639867-56032099	Weak transcription Strong transcription Flanking Active TSS Genic enhancers Enhancers Active TSS Bivalent Enhancer ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	31 gene(s)	inside rSNPs	diseases
11	nsv520799	chr15:55645661-55760522	Weak transcription ZNF genes & repeats Strong transcription Flanking Active TSS Genic enhancers Active TSS Enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region miRNA miRNA target site	23 gene(s)	inside rSNPs	diseases
12	nsv569525	chr15:55653181-55656615	Strong transcription Weak transcription Enhancers Genic enhancers	TF binding region Chromatin interactive region	3 gene(s)	inside rSNPs	n/a
13	nsv569526	chr15:55653591-55656615	Weak transcription Strong transcription	TF binding region Chromatin interactive region	3 gene(s)	inside rSNPs	n/a
14	nsv569527	chr15:55654412-55656352	Weak transcription Strong transcription	TF binding region Chromatin interactive region	2 gene(s)	inside rSNPs	n/a
15	nsv569528	chr15:55654412-55656560	Weak transcription Strong transcription	TF binding region Chromatin interactive region	3 gene(s)	inside rSNPs	n/a
16	nsv569529	chr15:55654412-55656615	Weak transcription Strong transcription	TF binding region Chromatin interactive region	3 gene(s)	inside rSNPs	n/a
17	esv3311785	chr15:55655174-55657342	Strong transcription Weak transcription	TF binding region Chromatin interactive region	4 gene(s)	inside rSNPs	n/a
18	esv3311784	chr15:55655307-55657154	Weak transcription Strong transcription	TF binding region Chromatin interactive region	4 gene(s)	inside rSNPs	n/a
19	esv9731	chr15:55655378-55657167	Weak transcription Strong transcription	TF binding region Chromatin interactive region	4 gene(s)	inside rSNPs	n/a
20	nsv827337	chr15:55655391-55656844	Weak transcription Strong transcription	TF binding region Chromatin interactive region	4 gene(s)	inside rSNPs	n/a
21	esv3311787	chr15:55655460-55657120	Weak transcription Strong transcription	TF binding region Chromatin interactive region	4 gene(s)	inside rSNPs	n/a
22	esv3311788	chr15:55655538-55657072	Weak transcription Strong transcription	TF binding region Chromatin interactive region	4 gene(s)	inside rSNPs	n/a
23	nsv569530	chr15:55655583-55656352	Strong transcription Weak transcription	TF binding region Chromatin interactive region	2 gene(s)	inside rSNPs	n/a
24	nsv569531	chr15:55655583-55656560	Weak transcription Strong transcription	TF binding region Chromatin interactive region	3 gene(s)	inside rSNPs	n/a
25	nsv569532	chr15:55655583-55656615	Weak transcription Strong transcription	TF binding region Chromatin interactive region	3 gene(s)	inside rSNPs	n/a
26	esv9998	chr15:55655607-55656732	Strong transcription Weak transcription	TF binding region Chromatin interactive region	3 gene(s)	inside rSNPs	n/a
27	nsv827338	chr15:55655627-55656844	Strong transcription Weak transcription	TF binding region Chromatin interactive region	4 gene(s)	inside rSNPs	n/a
28	nsv569533	chr15:55655687-55656508	Weak transcription Strong transcription	TF binding region Chromatin interactive region	3 gene(s)	inside rSNPs	n/a
29	nsv569534	chr15:55655687-55656615	Weak transcription Strong transcription	TF binding region Chromatin interactive region	3 gene(s)	inside rSNPs	n/a

No data

Chromatin state (count:104 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr15:55611800-55699400	Weak transcription	Colonic Mucosa	Colon
2	chr15:55612000-55665000	Weak transcription	Skeletal Muscle Male	skeletal muscle
3	chr15:55612000-55671000	Weak transcription	Right Ventricle	heart
4	chr15:55612000-55671000	Weak transcription	Small Intestine	intestine
5	chr15:55612600-55663600	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
6	chr15:55612600-55675600	Weak transcription	Aorta	Aorta
7	chr15:55612800-55677600	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
8	chr15:55620400-55658000	Strong transcription	Monocytes-CD14+_RO01746	blood
9	chr15:55623800-55660200	Weak transcription	Brain Inferior Temporal Lobe	brain
10	chr15:55630000-55695000	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
11	chr15:55630400-55675600	Weak transcription	Rectal Smooth Muscle	rectum
12	chr15:55630600-55655800	Weak transcription	Brain Angular Gyrus	brain
13	chr15:55630600-55660200	Weak transcription	Brain Cingulate Gyrus	brain
14	chr15:55630600-55663200	Weak transcription	Fetal Lung	lung
15	chr15:55630600-55667800	Weak transcription	Colon Smooth Muscle	Colon
16	chr15:55630600-55668400	Weak transcription	Brain Substantia Nigra	brain
17	chr15:55630800-55683600	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
18	chr15:55631000-55667800	Weak transcription	Brain Hippocampus Middle	brain
19	chr15:55631200-55663200	Weak transcription	Pancreas	Pancrea
20	chr15:55631200-55674000	Weak transcription	Placenta	Placenta
21	chr15:55633600-55667200	Weak transcription	Primary T helper naive cells from peripheral blood	blood
22	chr15:55635800-55675200	Weak transcription	Fetal Brain Male	brain
23	chr15:55636600-55657000	Weak transcription	Fetal Brain Female	brain
24	chr15:55636600-55678200	Weak transcription	Fetal Thymus	thymus
25	chr15:55636800-55666200	Weak transcription	Brain Germinal Matrix	brain
26	chr15:55637000-55660400	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
27	chr15:55637000-55663000	Weak transcription	K562	blood
28	chr15:55637000-55663400	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
29	chr15:55637000-55671400	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
30	chr15:55637000-55699600	Weak transcription	Cortex derived primary cultured neurospheres	brain
31	chr15:55637400-55680200	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
32	chr15:55638000-55658200	Strong transcription	Primary neutrophils fromperipheralblood	blood
33	chr15:55641000-55667800	Weak transcription	Spleen	Spleen
34	chr15:55641000-55668000	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
35	chr15:55641000-55671600	Weak transcription	Thymus	Thymus
36	chr15:55641200-55658200	Strong transcription	Primary Natural Killer cells fromperipheralblood	blood
37	chr15:55641600-55660200	Weak transcription	Gastric	stomach
38	chr15:55643000-55664000	Weak transcription	GM12878-XiMat	blood
39	chr15:55643200-55656400	Weak transcription	Hela-S3	cervix
40	chr15:55645000-55665000	Weak transcription	Fetal Intestine Small	intestine
41	chr15:55645000-55667800	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
42	chr15:55645000-55680800	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
43	chr15:55645200-55657400	Strong transcription	Liver	Liver
44	chr15:55645600-55681400	Weak transcription	Stomach Mucosa	stomach
45	chr15:55646400-55656200	Strong transcription	Skeletal Muscle Female	skeletal muscle
46	chr15:55646400-55657400	Strong transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
47	chr15:55646400-55658400	Strong transcription	Primary monocytes fromperipheralblood	blood
48	chr15:55646600-55658000	Strong transcription	Adipose Nuclei	Adipose
49	chr15:55646800-55660600	Strong transcription	Breast Myoepithelial Primary Cells	Breast
50	chr15:55647800-55695400	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood

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