Variant report

Variant	rs55914834
Chromosome Location	chr10:49622917-49622918
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr10:49619514..49622153-chr10:49622504..49625064,2	K562	blood:
2	chr10:49620234..49623060-chr10:49677590..49681287,3	K562	blood:
3	chr10:49620652..49623307-chr10:49629695..49632361,2	K562	blood:

Extended variants
information (count: 50 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:47)

rs_ID	r²[population]
rs17697837	0.95[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs17697885	0.81[AMR][1000 genomes];0.97[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs17770615	0.92[AMR][1000 genomes];0.97[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs2141515	0.82[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs2289806	0.85[ASN][1000 genomes]
rs2889612	0.85[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs34278434	0.81[AMR][1000 genomes];0.96[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs41306926	0.92[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs55710197	0.83[AFR][1000 genomes];0.92[AMR][1000 genomes];0.97[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs55923567	0.92[AMR][1000 genomes];0.97[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs56037570	0.85[AMR][1000 genomes];0.95[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs56103304	0.85[AMR][1000 genomes];0.95[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs56195836	0.88[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs56278337	0.92[AMR][1000 genomes];0.97[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs56361423	0.81[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs56809322	0.82[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs57775594	0.92[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs57915819	1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs59797355	0.82[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs60449431	0.85[AMR][1000 genomes];0.95[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs66738605	0.82[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs66864000	0.92[EUR][1000 genomes]
rs66962508	0.82[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs67071575	0.85[AMR][1000 genomes];0.92[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs67646014	0.82[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs67967483	0.85[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs72783089	0.84[EUR][1000 genomes]
rs72792260	0.82[AMR][1000 genomes];0.82[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs72792262	0.82[AMR][1000 genomes];0.82[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs72792264	0.85[AMR][1000 genomes];0.93[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs72792269	0.85[AMR][1000 genomes];0.95[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs72792272	0.85[AMR][1000 genomes];0.95[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs72792274	0.94[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs72792284	0.85[AMR][1000 genomes];0.95[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs72792285	0.85[AMR][1000 genomes];0.92[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs72792290	0.81[AMR][1000 genomes];0.94[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs72792295	0.85[AMR][1000 genomes];0.95[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs72794355	0.85[AMR][1000 genomes];0.95[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs72794356	0.91[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs72794358	0.92[AMR][1000 genomes];0.94[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs72794369	0.92[AMR][1000 genomes];0.96[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs72794372	0.92[AMR][1000 genomes];0.97[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs72794376	0.81[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs72794378	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs72796303	0.92[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs72796304	0.91[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs72796308	0.91[EUR][1000 genomes];0.92[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv895371	chr10:49492075-50232180	Weak transcription Active TSS Bivalent Enhancer Flanking Active TSS Enhancers Flanking Bivalent TSS/Enh Strong transcription Bivalent/Poised TSS Transcr. at gene 5' and 3' Genic enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA	35 gene(s)	inside rSNPs	diseases
2	nsv895372	chr10:49576878-49933488	Enhancers Weak transcription Bivalent Enhancer Genic enhancers Strong transcription Flanking Bivalent TSS/Enh Flanking Active TSS Transcr. at gene 5' and 3' ZNF genes & repeats Active TSS Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	20 gene(s)	inside rSNPs	diseases
3	nsv1039508	chr10:49595718-49654403	Enhancers Weak transcription Strong transcription Genic enhancers ZNF genes & repeats Flanking Active TSS Bivalent Enhancer Transcr. at gene 5' and 3' Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:114 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:49607600-49624200	Weak transcription	Gastric	stomach
2	chr10:49607600-49624200	Weak transcription	Lung	lung
3	chr10:49607600-49647800	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
4	chr10:49607600-49652400	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
5	chr10:49608000-49645600	Weak transcription	Primary T helper naive cells from peripheral blood	blood
6	chr10:49608200-49634400	Weak transcription	Rectal Mucosa Donor 31	rectum
7	chr10:49612000-49664200	Weak transcription	Thymus	Thymus
8	chr10:49612800-49660200	Weak transcription	Aorta	Aorta
9	chr10:49614600-49623000	Weak transcription	Pancreas	Pancrea
10	chr10:49614800-49638400	Weak transcription	HUVEC	blood vessel
11	chr10:49617200-49624200	Weak transcription	Left Ventricle	heart
12	chr10:49619000-49664200	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
13	chr10:49619600-49628000	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
14	chr10:49619600-49634000	Weak transcription	HUES48 Cell Line	embryonic stem cell
15	chr10:49619600-49645600	Weak transcription	Skeletal Muscle Male	skeletal muscle
16	chr10:49619800-49634400	Weak transcription	iPS-18 Cell Line	embryonic stem cell
17	chr10:49620600-49643400	Weak transcription	Brain Cingulate Gyrus	brain
18	chr10:49620800-49626000	Weak transcription	Ovary	ovary
19	chr10:49620800-49634000	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
20	chr10:49620800-49634400	Weak transcription	Sigmoid Colon	Sigmoid Colon
21	chr10:49620800-49643400	Weak transcription	Right Ventricle	heart
22	chr10:49620800-49646800	Weak transcription	Hela-S3	cervix
23	chr10:49620800-49647000	Weak transcription	NHDF-Ad	bronchial
24	chr10:49620800-49647600	Weak transcription	Colonic Mucosa	Colon
25	chr10:49620800-49652400	Weak transcription	H1 Cell Line	embryonic stem cell
26	chr10:49620800-49658600	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
27	chr10:49621000-49625200	Weak transcription	ES-I3 Cell Line	embryonic stem cell
28	chr10:49621000-49638400	Weak transcription	Fetal Stomach	stomach
29	chr10:49621000-49638800	Weak transcription	Brain Germinal Matrix	brain
30	chr10:49621200-49624200	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
31	chr10:49621200-49624400	Weak transcription	HSMM	muscle
32	chr10:49621200-49625000	Weak transcription	Adipose Nuclei	Adipose
33	chr10:49621200-49626000	Weak transcription	Brain Anterior Caudate	brain
34	chr10:49621200-49632000	Weak transcription	Psoas Muscle	Psoas
35	chr10:49621200-49638400	Weak transcription	Fetal Muscle Leg	muscle
36	chr10:49621200-49638800	Weak transcription	Brain Inferior Temporal Lobe	brain
37	chr10:49621200-49641600	Weak transcription	Small Intestine	intestine
38	chr10:49621200-49641800	Weak transcription	Rectal Smooth Muscle	rectum
39	chr10:49621200-49643400	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
40	chr10:49621200-49647000	Weak transcription	Fetal Intestine Small	intestine
41	chr10:49621200-49647400	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
42	chr10:49621200-49647800	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
43	chr10:49621200-49657400	Weak transcription	Brain Hippocampus Middle	brain
44	chr10:49621400-49623000	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
45	chr10:49621400-49623200	Weak transcription	NHLF	lung
46	chr10:49621400-49624000	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
47	chr10:49621400-49624200	Weak transcription	Breast Myoepithelial Primary Cells	Breast
48	chr10:49621400-49624200	Weak transcription	HSMMtube	muscle
49	chr10:49621400-49624800	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
50	chr10:49621400-49625400	Weak transcription	HUES6 Cell Line	embryonic stem cell

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