Variant report

Variant	rs17697885
Chromosome Location	chr10:49569730-49569731
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr10:49528793..49531665-chr10:49568295..49570746,2	K562	blood:
2	chr10:49565426..49568203-chr10:49568307..49571165,2	K562	blood:

Extended variants
information (count: 106 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:101)

rs_ID	r²[population]
rs10735226	1.00[JPT][hapmap]
rs10776614	1.00[JPT][hapmap]
rs10776615	1.00[JPT][hapmap]
rs10857550	1.00[CHB][hapmap]
rs10857592	1.00[JPT][hapmap]
rs10857596	1.00[JPT][hapmap]
rs11101355	1.00[JPT][hapmap]
rs11101357	1.00[JPT][hapmap]
rs11101368	1.00[JPT][hapmap]
rs11101377	1.00[JPT][hapmap]
rs11101381	1.00[JPT][hapmap]
rs11101382	1.00[JPT][hapmap]
rs11812546	1.00[JPT][hapmap]
rs12257900	1.00[CHB][hapmap]
rs12358311	1.00[JPT][hapmap]
rs12358315	1.00[JPT][hapmap]
rs12777174	1.00[JPT][hapmap]
rs12777190	1.00[JPT][hapmap]
rs1345109	1.00[JPT][hapmap]
rs1345110	1.00[JPT][hapmap]
rs1345111	1.00[JPT][hapmap]
rs1348633	1.00[JPT][hapmap]
rs17697560	0.83[GIH][hapmap]
rs17697837	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.96[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17770615	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.81[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1814469	1.00[JPT][hapmap]
rs1838568	1.00[JPT][hapmap]
rs1838569	1.00[JPT][hapmap]
rs1838570	1.00[JPT][hapmap]
rs1838573	1.00[JPT][hapmap]
rs1965170	1.00[JPT][hapmap]
rs2047748	0.83[GIH][hapmap]
rs2077152	1.00[JPT][hapmap]
rs2141515	1.00[CEU][hapmap];1.00[CHB][hapmap];0.92[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[TSI][hapmap];0.85[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs2289806	0.88[ASN][1000 genomes]
rs2889612	0.88[CEU][hapmap];1.00[CHB][hapmap];0.96[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs34278434	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4080665	1.00[JPT][hapmap]
rs41306926	0.90[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs41510345	1.00[JPT][hapmap]
rs4450130	1.00[JPT][hapmap]
rs4838418	1.00[JPT][hapmap]
rs4838605	1.00[JPT][hapmap]
rs4838606	1.00[JPT][hapmap]
rs55710197	0.81[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs55914834	0.81[AMR][1000 genomes];0.97[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs55923567	0.81[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs56037570	0.81[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs56103304	0.81[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs56195836	0.96[AMR][1000 genomes];0.90[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs56278337	0.81[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs56361423	0.81[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs56809322	0.85[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs57775594	0.88[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs57915819	0.81[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs59797355	0.85[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs60449431	0.81[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs66738605	0.85[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs66864000	0.90[EUR][1000 genomes]
rs66962508	0.85[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs67071575	0.81[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs67646014	0.85[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs67967483	0.81[AMR][1000 genomes];0.97[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs7069220	1.00[JPT][hapmap]
rs7071095	1.00[JPT][hapmap]
rs7071480	1.00[JPT][hapmap]
rs7074631	1.00[JPT][hapmap]
rs7085183	1.00[JPT][hapmap]
rs7085335	1.00[JPT][hapmap]
rs7087729	1.00[JPT][hapmap]
rs7093726	1.00[JPT][hapmap]
rs7094216	1.00[JPT][hapmap]
rs7096053	1.00[JPT][hapmap]
rs7098068	1.00[JPT][hapmap]
rs72783089	0.87[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs72792260	0.85[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs72792262	0.85[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs72792264	0.81[AMR][1000 genomes];0.96[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs72792269	0.81[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72792272	0.81[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72792274	1.00[AFR][1000 genomes];0.96[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72792284	0.81[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72792285	0.81[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72792290	1.00[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72792295	0.81[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72794355	0.81[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72794356	0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72794358	0.81[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72794369	0.81[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72794372	0.81[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72794376	0.81[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72794378	0.81[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72796303	0.90[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs72796304	0.88[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs72796308	0.88[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs747533	1.00[JPT][hapmap]
rs7911247	1.00[JPT][hapmap]
rs7915233	1.00[JPT][hapmap]
rs905184	0.83[GIH][hapmap]
rs935271	1.00[JPT][hapmap]
rs9651393	1.00[CHB][hapmap]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv895366	chr10:49299274-49576454	Enhancers Active TSS Weak transcription Flanking Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Strong transcription Bivalent Enhancer Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	12 gene(s)	inside rSNPs	diseases
2	nsv467190	chr10:49402084-49576878	Flanking Active TSS Enhancers Weak transcription Active TSS Bivalent Enhancer Strong transcription ZNF genes & repeats Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases
3	nsv550811	chr10:49402084-49576878	Weak transcription Enhancers Active TSS Flanking Active TSS Bivalent/Poised TSS Bivalent Enhancer Genic enhancers Strong transcription ZNF genes & repeats Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases
4	nsv895371	chr10:49492075-50232180	Weak transcription Active TSS Bivalent Enhancer Flanking Active TSS Enhancers Flanking Bivalent TSS/Enh Strong transcription Bivalent/Poised TSS Transcr. at gene 5' and 3' Genic enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA	35 gene(s)	inside rSNPs	diseases
5	nsv6587	chr10:49526329-49571804	Weak transcription Genic enhancers Enhancers ZNF genes & repeats Flanking Active TSS Active TSS Strong transcription	Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:29 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:49543000-49576200	Weak transcription	Right Atrium	heart
2	chr10:49559600-49572000	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
3	chr10:49563600-49572000	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
4	chr10:49566000-49571800	Weak transcription	Adipose Nuclei	Adipose
5	chr10:49566000-49573200	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
6	chr10:49566400-49580000	Weak transcription	Colon Smooth Muscle	Colon
7	chr10:49566800-49571800	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
8	chr10:49568000-49571200	Weak transcription	Liver	Liver
9	chr10:49568200-49573000	Weak transcription	Brain Anterior Caudate	brain
10	chr10:49568400-49569800	Enhancers	Muscle Satellite Cultured Cells	--
11	chr10:49568400-49570200	Enhancers	Fetal Lung	lung
12	chr10:49568600-49570200	Enhancers	HUVEC	blood vessel
13	chr10:49568600-49571600	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
14	chr10:49568600-49582000	Weak transcription	Psoas Muscle	Psoas
15	chr10:49568800-49571800	Weak transcription	Brain Angular Gyrus	brain
16	chr10:49568800-49571800	Weak transcription	NHLF	lung
17	chr10:49568800-49572000	Weak transcription	Skeletal Muscle Female	skeletal muscle
18	chr10:49568800-49573200	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
19	chr10:49568800-49576400	Weak transcription	Ovary	ovary
20	chr10:49569000-49572000	Enhancers	Fetal Heart	heart
21	chr10:49569200-49570200	Enhancers	Pancreatic Islets	Pancreatic Islet
22	chr10:49569400-49571200	Weak transcription	K562	blood
23	chr10:49569400-49571800	Weak transcription	NHDF-Ad	bronchial
24	chr10:49569400-49573000	Weak transcription	Brain Inferior Temporal Lobe	brain
25	chr10:49569400-49574400	Weak transcription	Rectal Smooth Muscle	rectum
26	chr10:49569600-49569800	Enhancers	A549	lung
27	chr10:49569600-49570400	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
28	chr10:49569600-49571200	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
29	chr10:49569600-49571800	Weak transcription	HSMM	muscle

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