Variant report

Variant	rs935271
Chromosome Location	chr10:49755249-49755250
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 83 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:81)

rs_ID	r²[population]
rs10491040	0.87[ASN][1000 genomes]
rs10735226	1.00[JPT][hapmap]
rs10776614	0.82[CHB][hapmap];1.00[JPT][hapmap];0.91[ASN][1000 genomes]
rs10776615	0.82[CHB][hapmap];1.00[JPT][hapmap];0.91[ASN][1000 genomes]
rs10776616	0.82[CHB][hapmap];0.93[ASN][1000 genomes]
rs10857592	1.00[JPT][hapmap]
rs10857596	0.82[CHB][hapmap];1.00[JPT][hapmap];0.91[ASN][1000 genomes]
rs10857598	0.87[ASN][1000 genomes]
rs11101355	1.00[JPT][hapmap]
rs11101357	1.00[JPT][hapmap]
rs11101368	1.00[JPT][hapmap]
rs11101377	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.95[YRI][hapmap];0.91[AFR][1000 genomes];1.00[AMR][1000 genomes];0.94[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs11101381	0.82[CHB][hapmap];1.00[JPT][hapmap];0.91[ASN][1000 genomes]
rs11101382	0.82[CHB][hapmap];1.00[JPT][hapmap]
rs11101384	0.82[CHB][hapmap];0.96[ASN][1000 genomes]
rs11812546	1.00[JPT][hapmap]
rs12358311	0.82[CHB][hapmap];1.00[JPT][hapmap];0.91[ASN][1000 genomes]
rs12358315	0.82[CHB][hapmap];1.00[JPT][hapmap];0.91[ASN][1000 genomes]
rs12412164	0.87[AMR][1000 genomes];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs12777174	1.00[JPT][hapmap]
rs12777190	1.00[JPT][hapmap]
rs1345104	0.82[CHB][hapmap];0.96[ASN][1000 genomes]
rs1345109	0.82[CHB][hapmap];1.00[JPT][hapmap];0.91[ASN][1000 genomes]
rs1345110	1.00[JPT][hapmap];0.91[ASN][1000 genomes]
rs1345111	0.82[CHB][hapmap];1.00[JPT][hapmap];0.91[ASN][1000 genomes]
rs1348633	1.00[JPT][hapmap];0.86[ASN][1000 genomes]
rs1445148	0.91[ASN][1000 genomes]
rs1473323	0.83[ASN][1000 genomes]
rs17697885	1.00[JPT][hapmap]
rs17770615	1.00[JPT][hapmap]
rs1814469	1.00[JPT][hapmap];0.86[ASN][1000 genomes]
rs1838568	0.82[CHB][hapmap];1.00[JPT][hapmap];0.91[ASN][1000 genomes]
rs1838569	0.82[CHB][hapmap];1.00[JPT][hapmap];0.91[ASN][1000 genomes]
rs1838570	0.82[CHB][hapmap];1.00[JPT][hapmap];0.91[ASN][1000 genomes]
rs1838573	1.00[CHB][hapmap];1.00[JPT][hapmap];0.85[ASN][1000 genomes]
rs1838574	0.87[ASN][1000 genomes]
rs1838579	0.82[CHB][hapmap];0.96[ASN][1000 genomes]
rs1900021	0.85[ASN][1000 genomes]
rs1965170	0.82[CHB][hapmap];1.00[JPT][hapmap];0.91[ASN][1000 genomes]
rs2077152	0.82[CHB][hapmap];1.00[JPT][hapmap];0.91[ASN][1000 genomes]
rs2120910	0.82[CHB][hapmap];0.96[ASN][1000 genomes]
rs4080665	1.00[JPT][hapmap]
rs4084916	0.87[ASN][1000 genomes]
rs4101278	0.85[ASN][1000 genomes]
rs41510345	1.00[JPT][hapmap]
rs4450130	1.00[JPT][hapmap]
rs4838418	1.00[JPT][hapmap];0.86[ASN][1000 genomes]
rs4838421	0.96[ASN][1000 genomes]
rs4838422	0.96[ASN][1000 genomes]
rs4838605	1.00[JPT][hapmap]
rs4838606	1.00[JPT][hapmap]
rs4838617	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes];0.94[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs4838623	0.82[CHB][hapmap];0.96[ASN][1000 genomes]
rs56058334	0.91[ASN][1000 genomes]
rs56080723	0.85[ASN][1000 genomes]
rs56248718	0.85[ASN][1000 genomes]
rs6537568	0.90[ASN][1000 genomes]
rs7069220	1.00[JPT][hapmap]
rs7071095	0.82[CHB][hapmap];1.00[JPT][hapmap];0.91[ASN][1000 genomes]
rs7071480	0.82[CHB][hapmap];1.00[JPT][hapmap];0.91[ASN][1000 genomes]
rs7072237	0.86[ASN][1000 genomes]
rs7074631	0.82[CHB][hapmap];1.00[JPT][hapmap];0.91[ASN][1000 genomes]
rs7085183	0.82[CHB][hapmap];1.00[JPT][hapmap];0.91[ASN][1000 genomes]
rs7085335	1.00[JPT][hapmap];0.89[ASN][1000 genomes]
rs7087729	0.82[CHB][hapmap];1.00[JPT][hapmap]
rs7088010	0.91[ASN][1000 genomes]
rs7093726	1.00[JPT][hapmap]
rs7094216	0.82[CHB][hapmap];1.00[JPT][hapmap];0.91[ASN][1000 genomes]
rs7096053	0.95[CEU][hapmap];0.85[CHB][hapmap];1.00[JPT][hapmap];0.98[AMR][1000 genomes];0.94[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs7098068	1.00[CHB][hapmap];1.00[JPT][hapmap];0.91[ASN][1000 genomes]
rs7350424	0.91[ASN][1000 genomes]
rs7350439	0.91[ASN][1000 genomes]
rs747533	0.86[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.91[AFR][1000 genomes];0.88[AMR][1000 genomes];0.83[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs7894707	0.82[CHB][hapmap];0.91[ASN][1000 genomes]
rs7894971	0.82[CHB][hapmap];0.96[ASN][1000 genomes]
rs7896644	0.82[CHB][hapmap];0.96[ASN][1000 genomes]
rs7904456	0.91[ASN][1000 genomes]
rs7905247	0.82[CHB][hapmap];0.96[ASN][1000 genomes]
rs7911247	1.00[JPT][hapmap]
rs7915233	1.00[JPT][hapmap]
rs7916108	0.82[CHB][hapmap];0.96[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv895371	chr10:49492075-50232180	Weak transcription Active TSS Bivalent Enhancer Flanking Active TSS Enhancers Flanking Bivalent TSS/Enh Strong transcription Bivalent/Poised TSS Transcr. at gene 5' and 3' Genic enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA	35 gene(s)	inside rSNPs	diseases
2	nsv895372	chr10:49576878-49933488	Enhancers Weak transcription Bivalent Enhancer Genic enhancers Strong transcription Flanking Bivalent TSS/Enh Flanking Active TSS Transcr. at gene 5' and 3' ZNF genes & repeats Active TSS Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	20 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:31 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:49734400-49762400	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
2	chr10:49735400-49756800	Weak transcription	HSMMtube	muscle
3	chr10:49735600-49755600	Weak transcription	Brain Angular Gyrus	brain
4	chr10:49739400-49762400	Weak transcription	Stomach Smooth Muscle	stomach
5	chr10:49742600-49774800	Weak transcription	Aorta	Aorta
6	chr10:49742800-49755600	Weak transcription	Brain Inferior Temporal Lobe	brain
7	chr10:49743800-49757800	Weak transcription	HMEC	breast
8	chr10:49749600-49758800	Weak transcription	NH-A	brain
9	chr10:49751200-49771600	Weak transcription	Pancreas	Pancrea
10	chr10:49751400-49759600	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
11	chr10:49752200-49760200	Strong transcription	HSMM	muscle
12	chr10:49753000-49756000	Strong transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
13	chr10:49753000-49760200	Strong transcription	Muscle Satellite Cultured Cells	--
14	chr10:49753200-49760200	Strong transcription	Osteobl	bone
15	chr10:49753400-49756400	Enhancers	Fetal Stomach	stomach
16	chr10:49753400-49759600	Strong transcription	NHLF	lung
17	chr10:49753400-49764400	Genic enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
18	chr10:49753800-49759600	Strong transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
19	chr10:49754000-49756000	Strong transcription	HUVEC	blood vessel
20	chr10:49754000-49756200	Strong transcription	IMR90 fetal lung fibroblasts Cell Line	lung
21	chr10:49754000-49757400	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
22	chr10:49754400-49755400	Strong transcription	Foreskin Fibroblast Primary Cells skin02	Skin
23	chr10:49754600-49755400	Weak transcription	Fetal Lung	lung
24	chr10:49754600-49756000	Strong transcription	NHDF-Ad	bronchial
25	chr10:49754800-49756000	Enhancers	Ovary	ovary
26	chr10:49754800-49756600	Strong transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
27	chr10:49755000-49755800	Strong transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
28	chr10:49755000-49761800	Weak transcription	Colon Smooth Muscle	Colon
29	chr10:49755200-49755800	Genic enhancers	Brain Substantia Nigra	brain
30	chr10:49755200-49756600	Enhancers	Brain Cingulate Gyrus	brain
31	chr10:49755200-49757000	Enhancers	Brain Hippocampus Middle	brain

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