Variant report

Variant	rs4084916
Chromosome Location	chr10:49776340-49776341
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr10:49776005..49778776-chr10:49783670..49785755,2	K562	blood:

Extended variants
information (count: 72 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:68)

rs_ID	r²[population]
rs10491040	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.94[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10776614	0.80[CEU][hapmap];0.82[AMR][1000 genomes];0.82[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs10776615	0.87[CEU][hapmap];0.82[AMR][1000 genomes];0.83[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs10776616	0.82[JPT][hapmap];0.89[ASN][1000 genomes]
rs10857592	0.81[ASN][1000 genomes]
rs10857596	1.00[CEU][hapmap];0.93[AMR][1000 genomes];0.94[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs10857598	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.97[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11101362	0.81[ASN][1000 genomes]
rs11101364	0.81[ASN][1000 genomes]
rs11101368	0.81[ASN][1000 genomes]
rs11101377	0.85[ASN][1000 genomes]
rs11101381	0.90[AMR][1000 genomes];0.94[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs11101382	1.00[CEU][hapmap]
rs11101384	0.87[ASN][1000 genomes]
rs11591281	0.81[ASN][1000 genomes]
rs12358311	1.00[CEU][hapmap];0.93[AMR][1000 genomes];0.94[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs12358315	1.00[CEU][hapmap];0.93[AMR][1000 genomes];0.94[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs12412164	0.85[ASN][1000 genomes]
rs1345104	0.87[ASN][1000 genomes]
rs1345109	1.00[CEU][hapmap];0.93[AMR][1000 genomes];0.94[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs1345110	1.00[CEU][hapmap];0.93[AMR][1000 genomes];0.94[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs1345111	1.00[CEU][hapmap];0.93[AMR][1000 genomes];0.94[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs1445148	0.93[AMR][1000 genomes];0.94[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs1473323	0.93[AMR][1000 genomes];0.94[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs1838568	1.00[CEU][hapmap];0.93[AMR][1000 genomes];0.94[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs1838569	1.00[CEU][hapmap];0.93[AMR][1000 genomes];0.94[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs1838570	1.00[CEU][hapmap];0.93[AMR][1000 genomes];0.94[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs1838573	0.84[ASN][1000 genomes]
rs1838574	0.86[ASN][1000 genomes]
rs1838579	0.87[ASN][1000 genomes]
rs1900021	0.84[ASN][1000 genomes]
rs1965170	1.00[CEU][hapmap];0.93[AMR][1000 genomes];0.94[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs2077152	0.95[ASN][1000 genomes]
rs2120910	0.87[ASN][1000 genomes]
rs34983450	0.81[ASN][1000 genomes]
rs4101278	0.84[ASN][1000 genomes]
rs4450130	0.81[ASN][1000 genomes]
rs4838421	0.87[ASN][1000 genomes]
rs4838422	0.87[ASN][1000 genomes]
rs4838617	0.85[ASN][1000 genomes]
rs4838623	0.87[ASN][1000 genomes]
rs56058334	0.93[AMR][1000 genomes];0.96[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs56080723	0.84[ASN][1000 genomes]
rs56248718	0.84[ASN][1000 genomes]
rs57601353	0.81[ASN][1000 genomes]
rs6537568	0.81[ASN][1000 genomes]
rs66695288	0.81[ASN][1000 genomes]
rs67372461	0.81[ASN][1000 genomes]
rs7071095	1.00[CEU][hapmap];0.93[AMR][1000 genomes];0.94[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs7071480	1.00[CEU][hapmap];0.93[AMR][1000 genomes];0.94[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs7074631	1.00[CEU][hapmap];0.93[AMR][1000 genomes];0.96[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs7085183	1.00[CEU][hapmap];0.93[AMR][1000 genomes];0.94[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs7085335	1.00[CEU][hapmap];0.93[AMR][1000 genomes];0.94[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs7087729	1.00[CEU][hapmap]
rs7088010	0.93[AMR][1000 genomes];0.96[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs7094216	1.00[CEU][hapmap];0.93[AMR][1000 genomes];0.96[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs7096053	0.81[ASN][1000 genomes]
rs7098068	1.00[CEU][hapmap];0.93[AMR][1000 genomes];0.94[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs7350424	0.93[AMR][1000 genomes];0.94[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs7350439	0.93[AMR][1000 genomes];0.94[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs747533	0.81[ASN][1000 genomes]
rs7894707	0.83[ASN][1000 genomes]
rs7894971	0.87[ASN][1000 genomes]
rs7896644	0.87[ASN][1000 genomes]
rs7904456	0.81[AMR][1000 genomes];0.82[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs7905247	0.87[ASN][1000 genomes]
rs7916108	0.87[ASN][1000 genomes]
rs935271	0.87[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv895371	chr10:49492075-50232180	Weak transcription Active TSS Bivalent Enhancer Flanking Active TSS Enhancers Flanking Bivalent TSS/Enh Strong transcription Bivalent/Poised TSS Transcr. at gene 5' and 3' Genic enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA	35 gene(s)	inside rSNPs	diseases
2	nsv895372	chr10:49576878-49933488	Enhancers Weak transcription Bivalent Enhancer Genic enhancers Strong transcription Flanking Bivalent TSS/Enh Flanking Active TSS Transcr. at gene 5' and 3' ZNF genes & repeats Active TSS Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	20 gene(s)	inside rSNPs	diseases
3	nsv6609	chr10:49770419-49778210	Weak transcription Strong transcription Enhancers Genic enhancers	Chromatin interactive region	n/a	inside rSNPs	diseases
4	nsv550815	chr10:49774633-49794481	Weak transcription Enhancers Strong transcription Flanking Active TSS Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent Enhancer	TF binding region Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:24 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:49757400-49782200	Weak transcription	HSMMtube	muscle
2	chr10:49761600-49780600	Weak transcription	HUVEC	blood vessel
3	chr10:49763200-49780800	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
4	chr10:49764400-49777800	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
5	chr10:49765000-49776400	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
6	chr10:49766000-49776800	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
7	chr10:49770800-49777400	Weak transcription	NH-A	brain
8	chr10:49771600-49779000	Genic enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
9	chr10:49771800-49780200	Strong transcription	Muscle Satellite Cultured Cells	--
10	chr10:49772000-49776800	Strong transcription	Osteobl	bone
11	chr10:49773000-49782600	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
12	chr10:49773000-49787400	Weak transcription	Brain Inferior Temporal Lobe	brain
13	chr10:49773200-49787800	Weak transcription	Brain Angular Gyrus	brain
14	chr10:49773400-49778000	Strong transcription	NHLF	lung
15	chr10:49773400-49786200	Weak transcription	Brain Hippocampus Middle	brain
16	chr10:49773400-49786600	Strong transcription	HSMM	muscle
17	chr10:49773600-49779400	Weak transcription	Primary hematopoietic stem cells short term culture	blood
18	chr10:49774200-49779400	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
19	chr10:49775200-49776600	Strong transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
20	chr10:49775200-49777400	Genic enhancers	Foreskin Fibroblast Primary Cells skin02	Skin
21	chr10:49775400-49777400	Weak transcription	NHDF-Ad	bronchial
22	chr10:49775600-49782600	Weak transcription	Aorta	Aorta
23	chr10:49776000-49777200	Strong transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
24	chr10:49776200-49776400	Genic enhancers	Brain Substantia Nigra	brain

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