Variant report

Variant	rs10776615
Chromosome Location	chr10:49763247-49763248
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr10:49761230..49763552-chr10:49773026..49775938,2	K562	blood:

Extended variants
information (count: 92 )
Associated
traits (count: 5 )

rSNPs within LD-proxies of this variant (count:90)

rs_ID	r²[population]
rs10491040	0.87[CEU][hapmap];0.86[CHD][hapmap];0.96[TSI][hapmap];0.82[AMR][1000 genomes];0.83[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs10735226	1.00[JPT][hapmap]
rs10776614	1.00[ASW][hapmap];0.94[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];0.87[GIH][hapmap];1.00[JPT][hapmap];1.00[LWK][hapmap];0.85[MKK][hapmap];1.00[TSI][hapmap];1.00[YRI][hapmap];0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10776616	1.00[CHB][hapmap];0.89[ASN][1000 genomes]
rs10857592	0.82[CHB][hapmap];1.00[JPT][hapmap];0.86[ASN][1000 genomes]
rs10857596	0.87[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.86[YRI][hapmap];0.88[AMR][1000 genomes];0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10857598	0.87[CEU][hapmap];0.85[AMR][1000 genomes];0.81[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs11101355	1.00[JPT][hapmap]
rs11101357	1.00[JPT][hapmap]
rs11101362	0.86[ASN][1000 genomes]
rs11101364	0.86[ASN][1000 genomes]
rs11101368	0.82[CHB][hapmap];1.00[JPT][hapmap];0.86[ASN][1000 genomes]
rs11101377	0.82[CHB][hapmap];0.92[CHD][hapmap];1.00[JPT][hapmap];0.89[ASN][1000 genomes]
rs11101381	1.00[CHB][hapmap];1.00[JPT][hapmap];0.86[YRI][hapmap];0.86[AMR][1000 genomes];0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11101382	0.87[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.86[YRI][hapmap]
rs11101384	1.00[CHB][hapmap];0.91[ASN][1000 genomes]
rs11591281	0.86[ASN][1000 genomes]
rs11812546	1.00[JPT][hapmap]
rs12358311	0.87[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.86[YRI][hapmap];0.88[AMR][1000 genomes];0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12358315	0.86[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.80[YRI][hapmap];0.88[AMR][1000 genomes];0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12412164	0.89[ASN][1000 genomes]
rs12777174	1.00[JPT][hapmap]
rs12777190	1.00[JPT][hapmap]
rs1345104	1.00[CHB][hapmap];1.00[CHD][hapmap];0.88[GIH][hapmap];0.91[ASN][1000 genomes]
rs1345109	0.87[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.89[MKK][hapmap];0.96[TSI][hapmap];0.86[YRI][hapmap];0.88[AMR][1000 genomes];0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1345110	0.87[CEU][hapmap];0.82[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.82[MEX][hapmap];0.89[MKK][hapmap];0.96[TSI][hapmap];0.86[YRI][hapmap];0.88[AMR][1000 genomes];0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1345111	0.87[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.83[MKK][hapmap];0.96[TSI][hapmap];0.86[YRI][hapmap];0.88[AMR][1000 genomes];0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1348633	1.00[JPT][hapmap]
rs1445148	0.88[AMR][1000 genomes];0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1445154	0.83[ASN][1000 genomes]
rs1473323	0.88[AMR][1000 genomes];0.89[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs17697885	1.00[JPT][hapmap]
rs17770615	1.00[JPT][hapmap]
rs1814469	1.00[JPT][hapmap]
rs1838568	0.86[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.86[YRI][hapmap];0.88[AMR][1000 genomes];0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1838569	0.93[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.86[YRI][hapmap];0.88[AMR][1000 genomes];0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1838570	0.87[ASW][hapmap];0.87[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.96[TSI][hapmap];0.84[YRI][hapmap];0.88[AMR][1000 genomes];0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1838573	0.82[CHB][hapmap];1.00[JPT][hapmap];0.88[ASN][1000 genomes]
rs1838574	0.90[ASN][1000 genomes]
rs1838579	1.00[CHB][hapmap];1.00[CHD][hapmap];0.88[GIH][hapmap];0.91[ASN][1000 genomes]
rs1900021	0.88[ASN][1000 genomes]
rs1965170	0.87[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.86[YRI][hapmap];0.88[AMR][1000 genomes];0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2077152	1.00[CHB][hapmap];0.92[CHD][hapmap];0.87[GIH][hapmap];1.00[JPT][hapmap];0.88[TSI][hapmap];1.00[ASN][1000 genomes]
rs2120910	1.00[CHB][hapmap];1.00[CHD][hapmap];0.88[GIH][hapmap];0.91[ASN][1000 genomes]
rs34983450	0.86[ASN][1000 genomes]
rs4080665	1.00[JPT][hapmap]
rs4084916	0.87[CEU][hapmap];0.82[AMR][1000 genomes];0.83[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs4101278	0.88[ASN][1000 genomes]
rs41510345	1.00[JPT][hapmap];0.84[ASN][1000 genomes]
rs4450130	0.82[CHB][hapmap];1.00[JPT][hapmap];0.86[ASN][1000 genomes]
rs4838418	1.00[JPT][hapmap]
rs4838421	0.91[ASN][1000 genomes]
rs4838422	0.91[ASN][1000 genomes]
rs4838605	1.00[JPT][hapmap]
rs4838606	1.00[JPT][hapmap]
rs4838617	0.89[ASN][1000 genomes]
rs4838623	1.00[CHB][hapmap];0.91[ASN][1000 genomes]
rs56058334	0.88[AMR][1000 genomes];0.87[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs56080723	0.88[ASN][1000 genomes]
rs56248718	0.88[ASN][1000 genomes]
rs57601353	0.86[ASN][1000 genomes]
rs6537568	0.85[ASN][1000 genomes]
rs66695288	0.86[ASN][1000 genomes]
rs67372461	0.86[ASN][1000 genomes]
rs7069220	1.00[JPT][hapmap]
rs7071095	0.87[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.86[YRI][hapmap];0.88[AMR][1000 genomes];0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7071480	0.87[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.86[YRI][hapmap];0.88[AMR][1000 genomes];0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7074631	0.87[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.86[YRI][hapmap];0.88[AMR][1000 genomes];0.87[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7085183	0.87[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.86[YRI][hapmap];0.88[AMR][1000 genomes];0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7085335	0.87[CEU][hapmap];0.82[CHB][hapmap];1.00[JPT][hapmap];0.85[YRI][hapmap];0.88[AMR][1000 genomes];0.89[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs7087729	0.87[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs7088010	0.88[AMR][1000 genomes];0.87[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7089439	0.82[ASN][1000 genomes]
rs7093726	1.00[JPT][hapmap]
rs7094216	0.87[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.86[YRI][hapmap];0.88[AMR][1000 genomes];0.87[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7096053	0.85[CHD][hapmap];1.00[JPT][hapmap];0.85[ASN][1000 genomes]
rs7098068	0.87[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.91[YRI][hapmap];0.88[AMR][1000 genomes];0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72785120	0.83[ASN][1000 genomes]
rs7350424	0.88[AMR][1000 genomes];0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7350439	0.88[AMR][1000 genomes];0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs747533	0.92[CHD][hapmap];1.00[JPT][hapmap];0.85[ASN][1000 genomes]
rs7894707	1.00[CHB][hapmap];1.00[CHD][hapmap];0.88[GIH][hapmap];0.87[ASN][1000 genomes]
rs7894971	1.00[CHB][hapmap];0.91[ASN][1000 genomes]
rs7896644	1.00[CHB][hapmap];1.00[CHD][hapmap];0.88[GIH][hapmap];0.91[ASN][1000 genomes]
rs7904456	0.93[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7905247	1.00[CHB][hapmap];1.00[CHD][hapmap];0.88[GIH][hapmap];0.91[ASN][1000 genomes]
rs7911247	1.00[JPT][hapmap]
rs7915233	1.00[JPT][hapmap]
rs7916108	1.00[CHB][hapmap];0.91[ASN][1000 genomes]
rs935271	0.82[CHB][hapmap];1.00[JPT][hapmap];0.91[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv895371	chr10:49492075-50232180	Weak transcription Active TSS Bivalent Enhancer Flanking Active TSS Enhancers Flanking Bivalent TSS/Enh Strong transcription Bivalent/Poised TSS Transcr. at gene 5' and 3' Genic enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA	35 gene(s)	inside rSNPs	diseases
2	nsv895372	chr10:49576878-49933488	Enhancers Weak transcription Bivalent Enhancer Genic enhancers Strong transcription Flanking Bivalent TSS/Enh Flanking Active TSS Transcr. at gene 5' and 3' ZNF genes & repeats Active TSS Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	20 gene(s)	inside rSNPs	diseases

mRNA abundance (count:5)

SNP	Gene	Cis/trans	Tissue	Source
rs10776615	FYN	trans	lymphoblastoid	seeQTL
rs10776615	A1CF	cis	cerebellum	SCAN
rs10776615	SYT15	cis	parietal	SCAN
rs10776615	PRKG1	cis	cerebellum	SCAN
rs10776615	FRMPD2	cis	cerebellum	SCAN

Chromatin state (count:34 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:49742600-49774800	Weak transcription	Aorta	Aorta
2	chr10:49751200-49771600	Weak transcription	Pancreas	Pancrea
3	chr10:49753400-49764400	Genic enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
4	chr10:49757400-49782200	Weak transcription	HSMMtube	muscle
5	chr10:49759200-49770400	Weak transcription	NH-A	brain
6	chr10:49759400-49763800	Enhancers	Brain Substantia Nigra	brain
7	chr10:49759800-49763600	Enhancers	Brain Cingulate Gyrus	brain
8	chr10:49759800-49764200	Enhancers	Brain Inferior Temporal Lobe	brain
9	chr10:49760200-49764600	Enhancers	Breast Myoepithelial Primary Cells	Breast
10	chr10:49760800-49765000	Strong transcription	NHLF	lung
11	chr10:49760800-49765400	Strong transcription	HSMM	muscle
12	chr10:49760800-49765600	Strong transcription	Muscle Satellite Cultured Cells	--
13	chr10:49760800-49768800	Weak transcription	Ovary	ovary
14	chr10:49761000-49764800	Strong transcription	Osteobl	bone
15	chr10:49761000-49765400	Strong transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
16	chr10:49761400-49764400	Strong transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
17	chr10:49761400-49765600	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
18	chr10:49761600-49780600	Weak transcription	HUVEC	blood vessel
19	chr10:49761800-49763600	Enhancers	Colon Smooth Muscle	Colon
20	chr10:49761800-49765400	Strong transcription	NHDF-Ad	bronchial
21	chr10:49762000-49763600	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
22	chr10:49762000-49764400	Genic enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
23	chr10:49762000-49764600	Strong transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
24	chr10:49762000-49765600	Weak transcription	H1 Cell Line	embryonic stem cell
25	chr10:49762200-49763400	Enhancers	Brain Dorsolateral Prefrontal Cortex	brain
26	chr10:49762200-49763600	Enhancers	Fetal Muscle Leg	muscle
27	chr10:49762400-49763800	Enhancers	Stomach Smooth Muscle	stomach
28	chr10:49762600-49772600	Weak transcription	Brain Angular Gyrus	brain
29	chr10:49762800-49763400	Enhancers	Brain Hippocampus Middle	brain
30	chr10:49762800-49763400	Genic enhancers	HMEC	breast
31	chr10:49762800-49764200	Weak transcription	Skeletal Muscle Male	skeletal muscle
32	chr10:49762800-49765400	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
33	chr10:49762800-49765600	Genic enhancers	Foreskin Fibroblast Primary Cells skin02	Skin
34	chr10:49763200-49780800	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast

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