Variant report

Variant	rs10776616
Chromosome Location	chr10:49771064-49771065
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 64 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:61)

rs_ID	r²[population]
rs10491040	0.82[JPT][hapmap];0.89[ASN][1000 genomes]
rs10776614	1.00[CHB][hapmap];0.89[ASN][1000 genomes]
rs10776615	1.00[CHB][hapmap];0.89[ASN][1000 genomes]
rs10857592	0.82[CHB][hapmap]
rs10857596	1.00[CHB][hapmap];0.89[ASN][1000 genomes]
rs10857598	0.82[JPT][hapmap];0.89[ASN][1000 genomes]
rs11101368	0.82[CHB][hapmap]
rs11101377	0.82[CHB][hapmap];0.91[ASN][1000 genomes]
rs11101381	1.00[CHB][hapmap];0.89[ASN][1000 genomes]
rs11101382	1.00[CHB][hapmap]
rs11101384	1.00[CEU][hapmap];1.00[CHB][hapmap];0.82[JPT][hapmap];0.88[AMR][1000 genomes];0.95[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs12358311	1.00[CHB][hapmap];0.89[ASN][1000 genomes]
rs12358315	0.81[CEU][hapmap];1.00[CHB][hapmap];0.89[ASN][1000 genomes]
rs12412164	0.91[ASN][1000 genomes]
rs1345104	1.00[CEU][hapmap];1.00[CHB][hapmap];0.82[JPT][hapmap];0.93[AMR][1000 genomes];0.96[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs1345109	1.00[CHB][hapmap];0.89[ASN][1000 genomes]
rs1345110	0.82[CHB][hapmap];0.89[ASN][1000 genomes]
rs1345111	1.00[CHB][hapmap];0.89[ASN][1000 genomes]
rs1348633	0.81[ASN][1000 genomes]
rs1445148	0.89[ASN][1000 genomes]
rs1473323	0.81[ASN][1000 genomes]
rs1814469	0.81[ASN][1000 genomes]
rs1838568	1.00[CHB][hapmap];0.89[ASN][1000 genomes]
rs1838569	1.00[CHB][hapmap];0.89[ASN][1000 genomes]
rs1838570	1.00[CHB][hapmap];0.89[ASN][1000 genomes]
rs1838573	0.82[CHB][hapmap]
rs1838574	0.81[ASN][1000 genomes]
rs1838579	1.00[CEU][hapmap];1.00[CHB][hapmap];0.82[JPT][hapmap];0.90[AMR][1000 genomes];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs1965170	1.00[CHB][hapmap];0.89[ASN][1000 genomes]
rs2077152	1.00[CHB][hapmap];0.89[ASN][1000 genomes]
rs2120910	1.00[CEU][hapmap];1.00[CHB][hapmap];0.93[AMR][1000 genomes];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs4084916	0.82[JPT][hapmap];0.89[ASN][1000 genomes]
rs4450130	0.82[CHB][hapmap]
rs4838418	0.81[ASN][1000 genomes]
rs4838421	0.90[AMR][1000 genomes];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs4838422	0.90[AMR][1000 genomes];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs4838617	0.91[ASN][1000 genomes]
rs4838623	1.00[CEU][hapmap];1.00[CHB][hapmap];0.82[JPT][hapmap];0.90[AMR][1000 genomes];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs56058334	0.89[ASN][1000 genomes]
rs6537568	0.89[AMR][1000 genomes];0.95[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs7071095	1.00[CHB][hapmap];0.89[ASN][1000 genomes]
rs7071480	1.00[CHB][hapmap];0.89[ASN][1000 genomes]
rs7072237	0.81[ASN][1000 genomes]
rs7074631	1.00[CHB][hapmap];0.89[ASN][1000 genomes]
rs7085183	1.00[CHB][hapmap];0.89[ASN][1000 genomes]
rs7085335	0.82[CHB][hapmap];0.87[ASN][1000 genomes]
rs7087729	1.00[CHB][hapmap]
rs7088010	0.89[ASN][1000 genomes]
rs7094216	1.00[CHB][hapmap];0.89[ASN][1000 genomes]
rs7096053	0.88[ASN][1000 genomes]
rs7098068	1.00[CHB][hapmap];0.89[ASN][1000 genomes]
rs7350424	0.89[ASN][1000 genomes]
rs7350439	0.89[ASN][1000 genomes]
rs747533	0.88[ASN][1000 genomes]
rs7894707	1.00[CEU][hapmap];1.00[CHB][hapmap];0.82[JPT][hapmap];0.90[AMR][1000 genomes];0.98[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs7894971	1.00[CEU][hapmap];1.00[CHB][hapmap];0.82[JPT][hapmap];0.90[AMR][1000 genomes];0.96[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs7896644	1.00[CEU][hapmap];1.00[CHB][hapmap];0.82[JPT][hapmap];0.93[AMR][1000 genomes];0.95[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs7904456	0.89[ASN][1000 genomes]
rs7905247	1.00[CEU][hapmap];1.00[CHB][hapmap];0.82[JPT][hapmap];0.93[AMR][1000 genomes];0.96[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs7916108	1.00[CEU][hapmap];1.00[CHB][hapmap];0.82[JPT][hapmap];0.90[AMR][1000 genomes];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs935271	0.82[CHB][hapmap];0.93[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv895371	chr10:49492075-50232180	Weak transcription Active TSS Bivalent Enhancer Flanking Active TSS Enhancers Flanking Bivalent TSS/Enh Strong transcription Bivalent/Poised TSS Transcr. at gene 5' and 3' Genic enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA	35 gene(s)	inside rSNPs	diseases
2	nsv895372	chr10:49576878-49933488	Enhancers Weak transcription Bivalent Enhancer Genic enhancers Strong transcription Flanking Bivalent TSS/Enh Flanking Active TSS Transcr. at gene 5' and 3' ZNF genes & repeats Active TSS Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	20 gene(s)	inside rSNPs	diseases
3	nsv6609	chr10:49770419-49778210	Weak transcription Strong transcription Enhancers Genic enhancers	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:21 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:49742600-49774800	Weak transcription	Aorta	Aorta
2	chr10:49751200-49771600	Weak transcription	Pancreas	Pancrea
3	chr10:49757400-49782200	Weak transcription	HSMMtube	muscle
4	chr10:49761600-49780600	Weak transcription	HUVEC	blood vessel
5	chr10:49762600-49772600	Weak transcription	Brain Angular Gyrus	brain
6	chr10:49763200-49780800	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
7	chr10:49763800-49772600	Weak transcription	Brain Substantia Nigra	brain
8	chr10:49764400-49777800	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
9	chr10:49765000-49773400	Weak transcription	NHLF	lung
10	chr10:49765000-49776400	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
11	chr10:49765400-49774000	Weak transcription	NHDF-Ad	bronchial
12	chr10:49766000-49776800	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
13	chr10:49766200-49772600	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
14	chr10:49767400-49772000	Weak transcription	Osteobl	bone
15	chr10:49769200-49771200	Strong transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
16	chr10:49769800-49771600	Strong transcription	Foreskin Fibroblast Primary Cells skin01	Skin
17	chr10:49770000-49775200	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
18	chr10:49770400-49771200	Strong transcription	Foreskin Fibroblast Primary Cells skin02	Skin
19	chr10:49770600-49773400	Weak transcription	HSMM	muscle
20	chr10:49770800-49777400	Weak transcription	NH-A	brain
21	chr10:49771000-49771800	Weak transcription	Muscle Satellite Cultured Cells	--

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