Variant report

Variant	rs7089439
Chromosome Location	chr10:49732141-49732142
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr10:49730645..49732196-chr10:49747881..49750168,2	K562	blood:
2	chr10:49731838..49732358-chr16:2014319..2015199,3	HCT-116	colon:
3	chr10:49731096..49734201-chr10:49864172..49866367,3	K562	blood:

Variant related genes	Relation type
ENSG00000128805	Chromatin interaction
ENSG00000140988	Chromatin interaction
ENSG00000255198	Chromatin interaction

Extended variants
information (count: 51 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:45)

rs_ID	r²[population]
rs10776614	0.82[ASN][1000 genomes]
rs10776615	0.82[ASN][1000 genomes]
rs10857592	0.97[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs10857596	0.82[ASN][1000 genomes]
rs11101362	0.95[ASN][1000 genomes]
rs11101364	0.95[ASN][1000 genomes]
rs11101368	0.81[AMR][1000 genomes];0.97[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs11101381	0.82[ASN][1000 genomes]
rs11591281	0.95[ASN][1000 genomes]
rs12358311	0.82[ASN][1000 genomes]
rs12358315	0.82[ASN][1000 genomes]
rs1345109	0.82[ASN][1000 genomes]
rs1345110	0.82[ASN][1000 genomes]
rs1345111	0.82[ASN][1000 genomes]
rs1445148	0.82[ASN][1000 genomes]
rs1445154	0.93[ASN][1000 genomes]
rs1838568	0.82[ASN][1000 genomes]
rs1838569	0.82[ASN][1000 genomes]
rs1838570	0.82[ASN][1000 genomes]
rs1838573	0.88[ASN][1000 genomes]
rs1838574	0.86[ASN][1000 genomes]
rs1900021	0.88[ASN][1000 genomes]
rs1965170	0.82[ASN][1000 genomes]
rs2077152	0.82[ASN][1000 genomes]
rs34983450	0.95[ASN][1000 genomes]
rs4101278	0.88[ASN][1000 genomes]
rs41510345	0.93[ASN][1000 genomes]
rs4450130	0.81[AMR][1000 genomes];0.97[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs56058334	0.82[ASN][1000 genomes]
rs56080723	0.88[ASN][1000 genomes]
rs56248718	0.88[ASN][1000 genomes]
rs57601353	0.95[ASN][1000 genomes]
rs66695288	0.95[ASN][1000 genomes]
rs67372461	0.95[ASN][1000 genomes]
rs7071095	0.82[ASN][1000 genomes]
rs7071480	0.82[ASN][1000 genomes]
rs7074631	0.82[ASN][1000 genomes]
rs7085183	0.82[ASN][1000 genomes]
rs7088010	0.82[ASN][1000 genomes]
rs7094216	0.82[ASN][1000 genomes]
rs7098068	0.82[ASN][1000 genomes]
rs72785120	0.88[ASN][1000 genomes]
rs7350424	0.82[ASN][1000 genomes]
rs7350439	0.82[ASN][1000 genomes]
rs7904456	0.82[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv895371	chr10:49492075-50232180	Weak transcription Active TSS Bivalent Enhancer Flanking Active TSS Enhancers Flanking Bivalent TSS/Enh Strong transcription Bivalent/Poised TSS Transcr. at gene 5' and 3' Genic enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA	35 gene(s)	inside rSNPs	diseases
2	nsv895372	chr10:49576878-49933488	Enhancers Weak transcription Bivalent Enhancer Genic enhancers Strong transcription Flanking Bivalent TSS/Enh Flanking Active TSS Transcr. at gene 5' and 3' ZNF genes & repeats Active TSS Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	20 gene(s)	inside rSNPs	diseases
3	nsv467191	chr10:49669142-49735563	Enhancers Flanking Active TSS Active TSS Bivalent Enhancer Strong transcription Weak transcription Flanking Bivalent TSS/Enh Genic enhancers Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases
4	nsv550813	chr10:49669142-49735563	Flanking Bivalent TSS/Enh Active TSS Weak transcription Genic enhancers Bivalent Enhancer Bivalent/Poised TSS Enhancers Flanking Active TSS Strong transcription ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases
5	nsv550814	chr10:49705142-49735563	Weak transcription Enhancers Strong transcription Flanking Active TSS Genic enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats Active TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
6	esv3392447	chr10:49731171-49733719	Flanking Bivalent TSS/Enh Weak transcription Flanking Active TSS Enhancers Bivalent/Poised TSS Active TSS Bivalent Enhancer Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:98 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:49730600-49732200	Flanking Active TSS	Stomach Smooth Muscle	stomach
2	chr10:49730800-49732800	Flanking Active TSS	Primary hematopoietic stem cells	blood
3	chr10:49730800-49732800	Flanking Active TSS	Foreskin Fibroblast Primary Cells skin02	Skin
4	chr10:49731000-49732400	Active TSS	ES-WA7 Cell Line	embryonic stem cell
5	chr10:49731200-49732200	Flanking Bivalent TSS/Enh	Foreskin Keratinocyte Primary Cells skin02	Skin
6	chr10:49731200-49732200	Flanking Bivalent TSS/Enh	Foreskin Keratinocyte Primary Cells skin03	Skin
7	chr10:49731200-49732200	Enhancers	Gastric	stomach
8	chr10:49731200-49732200	Active TSS	Right Atrium	heart
9	chr10:49731200-49732200	Flanking Active TSS	Right Ventricle	heart
10	chr10:49731200-49732200	Bivalent Enhancer	Sigmoid Colon	Sigmoid Colon
11	chr10:49731200-49732200	Bivalent Enhancer	Spleen	Spleen
12	chr10:49731200-49732200	Active TSS	HSMMtube	muscle
13	chr10:49731200-49732400	Active TSS	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
14	chr10:49731200-49732600	Active TSS	ES-I3 Cell Line	embryonic stem cell
15	chr10:49731200-49732600	Active TSS	iPS DF 6.9 Cell Line	embryonic stem cell
16	chr10:49731200-49732600	Active TSS	ES-UCSF4 Cell Line	embryonic stem cell
17	chr10:49731200-49732600	Flanking Active TSS	Muscle Satellite Cultured Cells	--
18	chr10:49731200-49732600	Active TSS	Aorta	Aorta
19	chr10:49731200-49732600	Bivalent Enhancer	Fetal Brain Male	brain
20	chr10:49731200-49732800	Bivalent/Poised TSS	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
21	chr10:49731400-49732200	Active TSS	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
22	chr10:49731400-49732200	Active TSS	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
23	chr10:49731400-49732200	Enhancers	Primary B cells from cord blood	blood
24	chr10:49731400-49732200	Flanking Active TSS	Cortex derived primary cultured neurospheres	brain
25	chr10:49731400-49732200	Flanking Bivalent TSS/Enh	Foreskin Melanocyte Primary Cells skin03	Skin
26	chr10:49731400-49732200	Flanking Active TSS	Adipose Nuclei	Adipose
27	chr10:49731400-49732200	Flanking Active TSS	Liver	Liver
28	chr10:49731400-49732200	Flanking Bivalent TSS/Enh	Colonic Mucosa	Colon
29	chr10:49731400-49732200	Bivalent/Poised TSS	Duodenum Mucosa	Duodenum
30	chr10:49731400-49732200	Bivalent/Poised TSS	Rectal Mucosa Donor 31	rectum
31	chr10:49731400-49732400	Active TSS	IMR90 fetal lung fibroblasts Cell Line	lung
32	chr10:49731400-49732400	Active TSS	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
33	chr10:49731400-49732400	Active TSS	Left Ventricle	heart
34	chr10:49731400-49732400	Bivalent/Poised TSS	Psoas Muscle	Psoas
35	chr10:49731400-49732400	Active TSS	Rectal Smooth Muscle	rectum
36	chr10:49731400-49732400	Active TSS	NH-A	brain
37	chr10:49731400-49732600	Active TSS	iPS-20b Cell Line	embryonic stem cell
38	chr10:49731400-49732600	Active TSS	Brain Dorsolateral Prefrontal Cortex	brain
39	chr10:49731400-49732600	Bivalent/Poised TSS	Fetal Brain Female	brain
40	chr10:49731400-49732600	Active TSS	Pancreatic Islets	Pancreatic Islet
41	chr10:49731400-49732600	Bivalent/Poised TSS	Thymus	Thymus
42	chr10:49731400-49732600	Active TSS	NHLF	lung
43	chr10:49731400-49732800	Active TSS	H1 Cell Line	embryonic stem cell
44	chr10:49731400-49732800	Active TSS	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
45	chr10:49731400-49732800	Active TSS	H9 Cell Line	embryonic stem cell
46	chr10:49731400-49732800	Active TSS	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
47	chr10:49731400-49732800	Active TSS	HUES48 Cell Line	embryonic stem cell
48	chr10:49731400-49732800	Active TSS	HUES6 Cell Line	embryonic stem cell
49	chr10:49731400-49732800	Bivalent/Poised TSS	HUES64 Cell Line	embryonic stem cell
50	chr10:49731400-49732800	Active TSS	iPS-15b Cell Line	embryonic stem cell

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