Variant report

Variant	rs10735226
Chromosome Location	chr10:49701652-49701653
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 63 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:59)

rs_ID	r²[population]
rs10745276	0.99[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10745277	0.92[AFR][1000 genomes]
rs10776607	0.88[AFR][1000 genomes]
rs10776608	0.83[YRI][hapmap];0.89[AFR][1000 genomes]
rs10776609	0.83[YRI][hapmap];0.89[AFR][1000 genomes]
rs10776610	0.81[AFR][1000 genomes]
rs10776614	1.00[JPT][hapmap]
rs10776615	1.00[JPT][hapmap]
rs10857592	1.00[JPT][hapmap]
rs10857596	1.00[JPT][hapmap]
rs11101355	1.00[JPT][hapmap]
rs11101357	1.00[JPT][hapmap]
rs11101368	1.00[JPT][hapmap]
rs11101377	1.00[JPT][hapmap]
rs11101381	1.00[JPT][hapmap]
rs11101382	1.00[JPT][hapmap]
rs11812546	1.00[JPT][hapmap]
rs12358311	1.00[JPT][hapmap]
rs12358315	1.00[JPT][hapmap]
rs12777174	1.00[JPT][hapmap]
rs12777190	1.00[JPT][hapmap]
rs1345109	1.00[JPT][hapmap]
rs1345110	1.00[JPT][hapmap]
rs1345111	1.00[JPT][hapmap]
rs1348633	1.00[JPT][hapmap]
rs17697837	1.00[JPT][hapmap]
rs17697885	1.00[JPT][hapmap]
rs17770615	1.00[JPT][hapmap]
rs1814469	1.00[JPT][hapmap]
rs1838568	1.00[JPT][hapmap]
rs1838569	1.00[JPT][hapmap]
rs1838570	1.00[JPT][hapmap]
rs1838573	1.00[JPT][hapmap]
rs1965170	1.00[JPT][hapmap]
rs2077152	1.00[JPT][hapmap]
rs2141515	1.00[JPT][hapmap]
rs4080665	1.00[JPT][hapmap]
rs41510345	1.00[JPT][hapmap]
rs4450130	1.00[JPT][hapmap]
rs4838418	1.00[JPT][hapmap]
rs4838605	0.87[CEU][hapmap];0.81[CHB][hapmap];0.82[CHD][hapmap];1.00[JPT][hapmap];0.86[MEX][hapmap];0.89[TSI][hapmap];0.83[AMR][1000 genomes];0.90[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs4838606	0.92[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.94[AMR][1000 genomes];0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7069220	1.00[JPT][hapmap]
rs7071095	1.00[JPT][hapmap]
rs7071480	1.00[JPT][hapmap]
rs7074631	1.00[JPT][hapmap]
rs7085183	1.00[JPT][hapmap]
rs7085335	1.00[JPT][hapmap]
rs7087729	1.00[JPT][hapmap]
rs7093726	1.00[JPT][hapmap]
rs7094216	1.00[JPT][hapmap]
rs7096053	1.00[JPT][hapmap]
rs7098068	1.00[JPT][hapmap]
rs747533	1.00[JPT][hapmap]
rs7911247	1.00[JPT][hapmap]
rs7913593	0.82[LWK][hapmap];0.82[AFR][1000 genomes]
rs7913612	0.93[LWK][hapmap];0.82[MKK][hapmap];0.85[AFR][1000 genomes]
rs7915233	1.00[JPT][hapmap]
rs935271	1.00[JPT][hapmap]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv895371	chr10:49492075-50232180	Weak transcription Active TSS Bivalent Enhancer Flanking Active TSS Enhancers Flanking Bivalent TSS/Enh Strong transcription Bivalent/Poised TSS Transcr. at gene 5' and 3' Genic enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA	35 gene(s)	inside rSNPs	diseases
2	nsv895372	chr10:49576878-49933488	Enhancers Weak transcription Bivalent Enhancer Genic enhancers Strong transcription Flanking Bivalent TSS/Enh Flanking Active TSS Transcr. at gene 5' and 3' ZNF genes & repeats Active TSS Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	20 gene(s)	inside rSNPs	diseases
3	nsv467191	chr10:49669142-49735563	Enhancers Flanking Active TSS Active TSS Bivalent Enhancer Strong transcription Weak transcription Flanking Bivalent TSS/Enh Genic enhancers Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases
4	nsv550813	chr10:49669142-49735563	Flanking Bivalent TSS/Enh Active TSS Weak transcription Genic enhancers Bivalent Enhancer Bivalent/Poised TSS Enhancers Flanking Active TSS Strong transcription ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:45 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:49679800-49704200	Weak transcription	NH-A	brain
2	chr10:49679800-49704200	Weak transcription	NHDF-Ad	bronchial
3	chr10:49685800-49704800	Weak transcription	HUVEC	blood vessel
4	chr10:49687000-49704400	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
5	chr10:49687600-49703800	Weak transcription	HSMMtube	muscle
6	chr10:49693000-49701800	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
7	chr10:49696800-49702600	Weak transcription	HSMM	muscle
8	chr10:49698000-49731200	Weak transcription	Aorta	Aorta
9	chr10:49698200-49702600	Enhancers	Brain Substantia Nigra	brain
10	chr10:49698400-49703800	Enhancers	Primary hematopoietic stem cells	blood
11	chr10:49699000-49702200	Enhancers	Brain Inferior Temporal Lobe	brain
12	chr10:49699200-49702400	Flanking Active TSS	Primary hematopoietic stem cells G-CSF-mobilized Female	--
13	chr10:49699200-49705200	Genic enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
14	chr10:49699200-49706000	Flanking Active TSS	Primary hematopoietic stem cells G-CSF-mobilized Male	--
15	chr10:49699200-49706400	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
16	chr10:49699400-49702000	Strong transcription	Osteobl	bone
17	chr10:49699400-49705200	Weak transcription	Brain Anterior Caudate	brain
18	chr10:49699800-49704800	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
19	chr10:49700400-49704200	Enhancers	Fetal Thymus	thymus
20	chr10:49700600-49702600	Flanking Active TSS	Primary hematopoietic stem cells short term culture	blood
21	chr10:49700600-49706800	Enhancers	K562	blood
22	chr10:49700800-49702400	Strong transcription	NHLF	lung
23	chr10:49701000-49703000	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
24	chr10:49701000-49703000	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
25	chr10:49701000-49703400	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
26	chr10:49701000-49703400	Enhancers	NHEK	skin
27	chr10:49701000-49703800	Strong transcription	Muscle Satellite Cultured Cells	--
28	chr10:49701200-49702000	Genic enhancers	H1 Derived Mesenchymal Stem Cells	ES cell derived
29	chr10:49701200-49702000	Enhancers	Primary monocytes fromperipheralblood	blood
30	chr10:49701200-49702000	Enhancers	Brain Angular Gyrus	brain
31	chr10:49701200-49702000	Enhancers	Monocytes-CD14+_RO01746	blood
32	chr10:49701200-49702200	Transcr. at gene 5' and 3'	Foreskin Fibroblast Primary Cells skin02	Skin
33	chr10:49701200-49702200	Enhancers	Brain Cingulate Gyrus	brain
34	chr10:49701200-49702400	Enhancers	Fetal Muscle Trunk	muscle
35	chr10:49701200-49703200	Enhancers	iPS DF 19.11 Cell Line	embryonic stem cell
36	chr10:49701400-49702000	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
37	chr10:49701400-49702600	Enhancers	Brain Hippocampus Middle	brain
38	chr10:49701400-49703000	Enhancers	Primary T cells from cord blood	blood
39	chr10:49701400-49706000	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
40	chr10:49701400-49706000	Enhancers	HMEC	breast
41	chr10:49701600-49701800	Bivalent Enhancer	Placenta	Placenta
42	chr10:49701600-49702400	Enhancers	Esophagus	oesophagus
43	chr10:49701600-49702600	Enhancers	HUES6 Cell Line	embryonic stem cell
44	chr10:49701600-49703000	Enhancers	Thymus	Thymus
45	chr10:49701600-49716400	Weak transcription	Right Atrium	heart

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