Variant report

Variant	rs72783089
Chromosome Location	chr10:49671569-49671570
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 42 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:38)

rs_ID	r²[population]
rs11812546	0.81[ASN][1000 genomes]
rs17697837	0.83[AMR][1000 genomes]
rs17697885	0.87[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs17770615	0.82[EUR][1000 genomes]
rs2889612	0.83[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs34278434	0.87[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs3906889	0.97[ASN][1000 genomes]
rs4080665	0.84[ASN][1000 genomes]
rs41306926	0.92[EUR][1000 genomes]
rs55710197	0.82[EUR][1000 genomes]
rs55914834	0.84[EUR][1000 genomes]
rs55923567	0.82[EUR][1000 genomes]
rs56195836	0.83[AMR][1000 genomes]
rs56278337	0.82[EUR][1000 genomes]
rs56342922	0.97[ASN][1000 genomes]
rs56361423	0.84[EUR][1000 genomes]
rs56390836	0.92[ASN][1000 genomes]
rs57775594	0.84[EUR][1000 genomes]
rs57915819	0.83[EUR][1000 genomes]
rs60262503	0.97[ASN][1000 genomes]
rs61838729	1.00[ASN][1000 genomes]
rs61838734	0.97[ASN][1000 genomes]
rs66864000	0.92[EUR][1000 genomes]
rs7069220	0.97[ASN][1000 genomes]
rs7093726	0.97[ASN][1000 genomes]
rs72783094	0.82[AMR][1000 genomes];0.87[ASN][1000 genomes]
rs72783101	0.82[AMR][1000 genomes];0.87[ASN][1000 genomes]
rs72792274	0.83[AMR][1000 genomes]
rs72792290	0.87[AMR][1000 genomes]
rs72794369	0.81[EUR][1000 genomes]
rs72794372	0.82[EUR][1000 genomes]
rs72794376	0.84[EUR][1000 genomes]
rs72794378	0.84[EUR][1000 genomes]
rs72796303	0.92[EUR][1000 genomes]
rs72796304	0.91[EUR][1000 genomes]
rs72796308	0.93[EUR][1000 genomes]
rs73303077	0.84[ASN][1000 genomes]
rs7895980	0.81[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv895371	chr10:49492075-50232180	Weak transcription Active TSS Bivalent Enhancer Flanking Active TSS Enhancers Flanking Bivalent TSS/Enh Strong transcription Bivalent/Poised TSS Transcr. at gene 5' and 3' Genic enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA	35 gene(s)	inside rSNPs	diseases
2	nsv895372	chr10:49576878-49933488	Enhancers Weak transcription Bivalent Enhancer Genic enhancers Strong transcription Flanking Bivalent TSS/Enh Flanking Active TSS Transcr. at gene 5' and 3' ZNF genes & repeats Active TSS Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	20 gene(s)	inside rSNPs	diseases
3	nsv467191	chr10:49669142-49735563	Enhancers Flanking Active TSS Active TSS Bivalent Enhancer Strong transcription Weak transcription Flanking Bivalent TSS/Enh Genic enhancers Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases
4	nsv550813	chr10:49669142-49735563	Flanking Bivalent TSS/Enh Active TSS Weak transcription Genic enhancers Bivalent Enhancer Bivalent/Poised TSS Enhancers Flanking Active TSS Strong transcription ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:57 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:49652000-49673000	Weak transcription	HMEC	breast
2	chr10:49653000-49673600	Weak transcription	iPS-20b Cell Line	embryonic stem cell
3	chr10:49655200-49677800	Weak transcription	H9 Cell Line	embryonic stem cell
4	chr10:49657800-49677600	Weak transcription	HSMMtube	muscle
5	chr10:49662200-49671800	Weak transcription	Aorta	Aorta
6	chr10:49662400-49672400	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
7	chr10:49662600-49671800	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
8	chr10:49665200-49671600	Weak transcription	ES-I3 Cell Line	embryonic stem cell
9	chr10:49665200-49673400	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
10	chr10:49665400-49672200	Weak transcription	Spleen	Spleen
11	chr10:49665400-49675000	Weak transcription	HUVEC	blood vessel
12	chr10:49665800-49671600	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
13	chr10:49665800-49672400	Weak transcription	Brain Substantia Nigra	brain
14	chr10:49668200-49674400	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
15	chr10:49668400-49671800	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
16	chr10:49668400-49676200	Weak transcription	NHLF	lung
17	chr10:49668800-49673200	Weak transcription	Muscle Satellite Cultured Cells	--
18	chr10:49668800-49674200	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
19	chr10:49669000-49674000	Enhancers	K562	blood
20	chr10:49669200-49672000	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
21	chr10:49669200-49674800	Genic enhancers	Foreskin Fibroblast Primary Cells skin02	Skin
22	chr10:49669800-49672000	Genic enhancers	Primary hematopoietic stem cells short term culture	blood
23	chr10:49670200-49675200	Weak transcription	Osteobl	bone
24	chr10:49670600-49673600	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
25	chr10:49670800-49672000	Weak transcription	HSMM	muscle
26	chr10:49670800-49672200	Enhancers	Right Atrium	heart
27	chr10:49670800-49672400	Enhancers	iPS DF 19.11 Cell Line	embryonic stem cell
28	chr10:49670800-49673600	Enhancers	Ovary	ovary
29	chr10:49670800-49674200	Bivalent Enhancer	Fetal Muscle Trunk	muscle
30	chr10:49670800-49674800	Genic enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
31	chr10:49671000-49672400	Enhancers	Fetal Stomach	stomach
32	chr10:49671000-49680400	Enhancers	Primary hematopoietic stem cells	blood
33	chr10:49671200-49671800	Enhancers	Brain Angular Gyrus	brain
34	chr10:49671200-49672200	Enhancers	Right Ventricle	heart
35	chr10:49671200-49672400	Enhancers	HUES6 Cell Line	embryonic stem cell
36	chr10:49671200-49673800	Enhancers	Cortex derived primary cultured neurospheres	brain
37	chr10:49671200-49674000	Enhancers	Fetal Heart	heart
38	chr10:49671200-49674400	Enhancers	Colon Smooth Muscle	Colon
39	chr10:49671200-49675400	Enhancers	Brain Hippocampus Middle	brain
40	chr10:49671400-49671600	Enhancers	Adipose Nuclei	Adipose
41	chr10:49671400-49671600	Enhancers	Left Ventricle	heart
42	chr10:49671400-49671600	Enhancers	Lung	lung
43	chr10:49671400-49671600	Enhancers	Placenta Amnion	Placenta Amnion
44	chr10:49671400-49672400	Enhancers	Placenta	Placenta
45	chr10:49671400-49672400	Enhancers	NHDF-Ad	bronchial
46	chr10:49671400-49672600	Enhancers	Fetal Muscle Leg	muscle
47	chr10:49671400-49672800	Weak transcription	Skeletal Muscle Male	skeletal muscle
48	chr10:49671400-49673600	Enhancers	Rectal Smooth Muscle	rectum
49	chr10:49671400-49673800	Enhancers	Brain Cingulate Gyrus	brain
50	chr10:49671400-49673800	Enhancers	Brain Inferior Temporal Lobe	brain

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