Variant report

Variant	rs61838729
Chromosome Location	chr10:49671251-49671252
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 18 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:14)

rs_ID	r²[population]
rs11812546	0.81[ASN][1000 genomes]
rs3906889	0.97[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs4080665	0.84[ASN][1000 genomes]
rs56342922	0.97[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs56390836	0.91[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs60262503	0.97[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs61838734	0.97[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs7069220	0.97[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs7093726	0.97[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs72783089	1.00[ASN][1000 genomes]
rs72783094	0.87[ASN][1000 genomes]
rs72783101	0.87[ASN][1000 genomes]
rs73303077	0.84[ASN][1000 genomes]
rs7895980	0.81[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv895371	chr10:49492075-50232180	Weak transcription Active TSS Bivalent Enhancer Flanking Active TSS Enhancers Flanking Bivalent TSS/Enh Strong transcription Bivalent/Poised TSS Transcr. at gene 5' and 3' Genic enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA	35 gene(s)	inside rSNPs	diseases
2	nsv895372	chr10:49576878-49933488	Enhancers Weak transcription Bivalent Enhancer Genic enhancers Strong transcription Flanking Bivalent TSS/Enh Flanking Active TSS Transcr. at gene 5' and 3' ZNF genes & repeats Active TSS Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	20 gene(s)	inside rSNPs	diseases
3	nsv467191	chr10:49669142-49735563	Enhancers Flanking Active TSS Active TSS Bivalent Enhancer Strong transcription Weak transcription Flanking Bivalent TSS/Enh Genic enhancers Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases
4	nsv550813	chr10:49669142-49735563	Flanking Bivalent TSS/Enh Active TSS Weak transcription Genic enhancers Bivalent Enhancer Bivalent/Poised TSS Enhancers Flanking Active TSS Strong transcription ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:48 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:49652000-49673000	Weak transcription	HMEC	breast
2	chr10:49653000-49673600	Weak transcription	iPS-20b Cell Line	embryonic stem cell
3	chr10:49655200-49677800	Weak transcription	H9 Cell Line	embryonic stem cell
4	chr10:49657800-49677600	Weak transcription	HSMMtube	muscle
5	chr10:49662200-49671800	Weak transcription	Aorta	Aorta
6	chr10:49662400-49672400	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
7	chr10:49662600-49671800	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
8	chr10:49664800-49671400	Weak transcription	Adipose Nuclei	Adipose
9	chr10:49664800-49671400	Weak transcription	NHDF-Ad	bronchial
10	chr10:49665200-49671600	Weak transcription	ES-I3 Cell Line	embryonic stem cell
11	chr10:49665200-49673400	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
12	chr10:49665400-49672200	Weak transcription	Spleen	Spleen
13	chr10:49665400-49675000	Weak transcription	HUVEC	blood vessel
14	chr10:49665800-49671400	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
15	chr10:49665800-49671400	Weak transcription	Brain Inferior Temporal Lobe	brain
16	chr10:49665800-49671600	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
17	chr10:49665800-49672400	Weak transcription	Brain Substantia Nigra	brain
18	chr10:49666400-49671400	Weak transcription	Brain Cingulate Gyrus	brain
19	chr10:49666600-49671400	Genic enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
20	chr10:49668200-49671400	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
21	chr10:49668200-49671400	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
22	chr10:49668200-49674400	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
23	chr10:49668400-49671800	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
24	chr10:49668400-49676200	Weak transcription	NHLF	lung
25	chr10:49668800-49673200	Weak transcription	Muscle Satellite Cultured Cells	--
26	chr10:49668800-49674200	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
27	chr10:49669000-49674000	Enhancers	K562	blood
28	chr10:49669200-49672000	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
29	chr10:49669200-49674800	Genic enhancers	Foreskin Fibroblast Primary Cells skin02	Skin
30	chr10:49669800-49672000	Genic enhancers	Primary hematopoietic stem cells short term culture	blood
31	chr10:49670200-49675200	Weak transcription	Osteobl	bone
32	chr10:49670600-49673600	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
33	chr10:49670800-49672000	Weak transcription	HSMM	muscle
34	chr10:49670800-49672200	Enhancers	Right Atrium	heart
35	chr10:49670800-49672400	Enhancers	iPS DF 19.11 Cell Line	embryonic stem cell
36	chr10:49670800-49673600	Enhancers	Ovary	ovary
37	chr10:49670800-49674200	Bivalent Enhancer	Fetal Muscle Trunk	muscle
38	chr10:49670800-49674800	Genic enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
39	chr10:49671000-49672400	Enhancers	Fetal Stomach	stomach
40	chr10:49671000-49680400	Enhancers	Primary hematopoietic stem cells	blood
41	chr10:49671200-49671400	Enhancers	Skeletal Muscle Male	skeletal muscle
42	chr10:49671200-49671800	Enhancers	Brain Angular Gyrus	brain
43	chr10:49671200-49672200	Enhancers	Right Ventricle	heart
44	chr10:49671200-49672400	Enhancers	HUES6 Cell Line	embryonic stem cell
45	chr10:49671200-49673800	Enhancers	Cortex derived primary cultured neurospheres	brain
46	chr10:49671200-49674000	Enhancers	Fetal Heart	heart
47	chr10:49671200-49674400	Enhancers	Colon Smooth Muscle	Colon
48	chr10:49671200-49675400	Enhancers	Brain Hippocampus Middle	brain

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