Variant report

Variant	rs61838734
Chromosome Location	chr10:49681118-49681119
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr10:49620234..49623060-chr10:49677590..49681287,3	K562	blood:

Extended variants
information (count: 19 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:15)

rs_ID	r²[population]
rs11812546	0.83[ASN][1000 genomes]
rs3906889	0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4080665	0.87[ASN][1000 genomes]
rs56342922	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs56390836	0.80[AMR][1000 genomes];0.94[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs60262503	0.87[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61838729	0.97[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs7069220	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7093726	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72783089	0.97[ASN][1000 genomes]
rs72783093	0.80[ASN][1000 genomes]
rs72783094	0.89[ASN][1000 genomes]
rs72783101	0.89[ASN][1000 genomes]
rs73303077	0.87[ASN][1000 genomes]
rs7895980	0.83[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv895371	chr10:49492075-50232180	Weak transcription Active TSS Bivalent Enhancer Flanking Active TSS Enhancers Flanking Bivalent TSS/Enh Strong transcription Bivalent/Poised TSS Transcr. at gene 5' and 3' Genic enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA	35 gene(s)	inside rSNPs	diseases
2	nsv895372	chr10:49576878-49933488	Enhancers Weak transcription Bivalent Enhancer Genic enhancers Strong transcription Flanking Bivalent TSS/Enh Flanking Active TSS Transcr. at gene 5' and 3' ZNF genes & repeats Active TSS Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	20 gene(s)	inside rSNPs	diseases
3	nsv467191	chr10:49669142-49735563	Enhancers Flanking Active TSS Active TSS Bivalent Enhancer Strong transcription Weak transcription Flanking Bivalent TSS/Enh Genic enhancers Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases
4	nsv550813	chr10:49669142-49735563	Flanking Bivalent TSS/Enh Active TSS Weak transcription Genic enhancers Bivalent Enhancer Bivalent/Poised TSS Enhancers Flanking Active TSS Strong transcription ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:50 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:49672400-49683400	Weak transcription	Spleen	Spleen
2	chr10:49672600-49681800	Weak transcription	Aorta	Aorta
3	chr10:49673000-49681200	Weak transcription	HSMM	muscle
4	chr10:49676200-49681600	Strong transcription	Muscle Satellite Cultured Cells	--
5	chr10:49678200-49687200	Weak transcription	HSMMtube	muscle
6	chr10:49678400-49683800	Weak transcription	HUES48 Cell Line	embryonic stem cell
7	chr10:49678800-49684000	Weak transcription	Placenta	Placenta
8	chr10:49678800-49684200	Weak transcription	ES-I3 Cell Line	embryonic stem cell
9	chr10:49678800-49684200	Weak transcription	H1 Cell Line	embryonic stem cell
10	chr10:49678800-49684200	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
11	chr10:49678800-49684200	Weak transcription	Right Atrium	heart
12	chr10:49679000-49683800	Weak transcription	Fetal Muscle Trunk	muscle
13	chr10:49679000-49683800	Weak transcription	Fetal Stomach	stomach
14	chr10:49679000-49684200	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
15	chr10:49679000-49684400	Weak transcription	iPS-20b Cell Line	embryonic stem cell
16	chr10:49679200-49682000	Genic enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
17	chr10:49679200-49690400	Weak transcription	H9 Cell Line	embryonic stem cell
18	chr10:49679400-49684000	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
19	chr10:49679400-49686200	Weak transcription	Brain Inferior Temporal Lobe	brain
20	chr10:49679600-49681200	Enhancers	Primary hematopoietic stem cells short term culture	blood
21	chr10:49679600-49682000	Genic enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
22	chr10:49679600-49683800	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
23	chr10:49679600-49684000	Weak transcription	Ovary	ovary
24	chr10:49679600-49685400	Weak transcription	Brain Angular Gyrus	brain
25	chr10:49679800-49682800	Weak transcription	HUVEC	blood vessel
26	chr10:49679800-49683400	Weak transcription	Brain Substantia Nigra	brain
27	chr10:49679800-49683400	Weak transcription	NHLF	lung
28	chr10:49679800-49684000	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
29	chr10:49679800-49684000	Weak transcription	HUES6 Cell Line	embryonic stem cell
30	chr10:49679800-49684200	Weak transcription	Breast Myoepithelial Primary Cells	Breast
31	chr10:49679800-49684200	Weak transcription	Fetal Thymus	thymus
32	chr10:49679800-49684600	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
33	chr10:49679800-49686800	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
34	chr10:49679800-49689000	Weak transcription	Brain Cingulate Gyrus	brain
35	chr10:49679800-49704200	Weak transcription	NH-A	brain
36	chr10:49679800-49704200	Weak transcription	NHDF-Ad	bronchial
37	chr10:49680000-49681200	Weak transcription	Osteobl	bone
38	chr10:49680000-49681400	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
39	chr10:49680000-49683200	Strong transcription	Foreskin Fibroblast Primary Cells skin01	Skin
40	chr10:49680000-49684200	Weak transcription	Esophagus	oesophagus
41	chr10:49680000-49684400	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
42	chr10:49680200-49683000	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
43	chr10:49680200-49684400	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
44	chr10:49680200-49684600	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
45	chr10:49680400-49681600	Weak transcription	Primary hematopoietic stem cells	blood
46	chr10:49680400-49684600	Weak transcription	NHEK	skin
47	chr10:49680600-49682000	ZNF genes & repeats	K562	blood
48	chr10:49680800-49684000	Weak transcription	HMEC	breast
49	chr10:49681000-49681800	Strong transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
50	chr10:49681000-49684200	Strong transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived

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