Variant report
Variant | rs55917919 |
---|---|
Chromosome Location | chr3:53936356-53936357 |
allele | G/T |
Outlinks | Ensembl   UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:2)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
No data |
No data |
(count:2 , 50 per page) page:
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No data |
No data |
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Variant related genes | Relation type |
---|---|
ENSG00000113812 | Chromatin interaction |
rs_ID | r2[population] |
---|---|
rs1020082 | 0.93[EUR][1000 genomes] |
rs1134091 | 0.85[AMR][1000 genomes];0.94[EUR][1000 genomes];0.86[ASN][1000 genomes] |
rs12632292 | 0.92[EUR][1000 genomes] |
rs17053568 | 0.90[EUR][1000 genomes] |
rs17053590 | 1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes] |
rs1982171 | 0.93[EUR][1000 genomes] |
rs2241806 | 0.92[EUR][1000 genomes] |
rs2276843 | 0.93[EUR][1000 genomes] |
rs2276844 | 0.93[EUR][1000 genomes] |
rs2276845 | 0.93[EUR][1000 genomes] |
rs2289203 | 0.88[AMR][1000 genomes];0.97[EUR][1000 genomes];0.86[ASN][1000 genomes] |
rs2304575 | 0.91[EUR][1000 genomes] |
rs2304576 | 0.93[EUR][1000 genomes] |
rs2884631 | 0.80[EUR][1000 genomes] |
rs3017 | 0.80[EUR][1000 genomes] |
rs3733079 | 0.89[EUR][1000 genomes] |
rs3733083 | 0.92[EUR][1000 genomes] |
rs3821869 | 0.80[EUR][1000 genomes] |
rs41292476 | 0.92[EUR][1000 genomes];0.85[ASN][1000 genomes] |
rs4141606 | 0.92[EUR][1000 genomes] |
rs45511795 | 0.92[EUR][1000 genomes] |
rs4687594 | 0.92[EUR][1000 genomes] |
rs4687753 | 0.80[EUR][1000 genomes] |
rs4687756 | 0.88[AFR][1000 genomes];0.88[AMR][1000 genomes];0.97[EUR][1000 genomes];0.86[ASN][1000 genomes] |
rs4687758 | 0.93[EUR][1000 genomes] |
rs4687760 | 0.88[AFR][1000 genomes];0.88[AMR][1000 genomes];0.92[EUR][1000 genomes];0.96[ASN][1000 genomes] |
rs56743403 | 0.89[AMR][1000 genomes];0.97[EUR][1000 genomes];0.87[ASN][1000 genomes] |
rs57398949 | 0.93[EUR][1000 genomes] |
rs62253005 | 0.81[EUR][1000 genomes];0.87[ASN][1000 genomes] |
rs6445612 | 0.91[EUR][1000 genomes] |
rs709324 | 0.80[EUR][1000 genomes] |
rs73078007 | 0.91[EUR][1000 genomes];0.96[ASN][1000 genomes] |
rs9840445 | 0.89[EUR][1000 genomes] |
rs9849951 | 0.92[EUR][1000 genomes] |
rs9850063 | 0.92[EUR][1000 genomes] |
rs9860367 | 0.80[EUR][1000 genomes] |
rs9880056 | 0.93[EUR][1000 genomes] |
rs999515 | 0.88[EUR][1000 genomes] |

No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
---|---|---|---|---|---|---|---|
1 | nsv1003621 | chr3:53448934-54425322 | Active TSS Strong transcription Bivalent Enhancer Weak transcription Flanking Active TSS Enhancers Genic enhancers Bivalent/Poised TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' | TF binding regionCpG islandChromatin interactive regionlncRNAmiRNA target site | 31 gene(s) | inside rSNPs | diseases |
2 | nsv1006990 | chr3:53849510-54285212 | Weak transcription Active TSS Enhancers Flanking Bivalent TSS/Enh Strong transcription Bivalent/Poised TSS Bivalent Enhancer Flanking Active TSS Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats | TF binding regionCpG islandChromatin interactive regionlncRNAmiRNA target site | 23 gene(s) | inside rSNPs | diseases |
3 | nsv1014752 | chr3:53912429-54123246 | Active TSS Bivalent Enhancer Enhancers Flanking Active TSS Transcr. at gene 5' and 3' Weak transcription Bivalent/Poised TSS ZNF genes & repeats Strong transcription Flanking Bivalent TSS/Enh Genic enhancers | TF binding regionCpG islandChromatin interactive regionlncRNA | 16 gene(s) | inside rSNPs | diseases |
4 | nsv1005411 | chr3:53927782-54158638 | Flanking Active TSS Flanking Bivalent TSS/Enh Enhancers Weak transcription Bivalent/Poised TSS Active TSS Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3' Genic enhancers | TF binding regionCpG islandChromatin interactive regionlncRNA | 7 gene(s) | inside rSNPs | diseases |