Variant report
| Variant | rs55923342 |
|---|---|
| Chromosome Location | chr6:69621364-69621365 |
| allele | C/T |
| Outlinks | Ensembl UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:0)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
| No data |
| No data |
| No data |
| No data |
| No data |
| No data |
| No data |
rSNPs within LD-proxies of this variant (count:17)
| rs_ID | r2[population] |
|---|---|
| rs16900236 | 1.00[AMR][1000 genomes] |
| rs59880009 | 1.00[AMR][1000 genomes] |
| rs60936330 | 0.88[AFR][1000 genomes];1.00[AMR][1000 genomes] |
| rs6924584 | 0.96[AFR][1000 genomes];1.00[AMR][1000 genomes] |
| rs73745892 | 1.00[AMR][1000 genomes] |
| rs73745893 | 1.00[AMR][1000 genomes] |
| rs73745900 | 1.00[AMR][1000 genomes] |
| rs73745907 | 1.00[AMR][1000 genomes] |
| rs73745913 | 1.00[AMR][1000 genomes] |
| rs73747807 | 1.00[AMR][1000 genomes] |
| rs73747810 | 1.00[AMR][1000 genomes] |
| rs73747812 | 1.00[AMR][1000 genomes] |
| rs73747822 | 0.94[AFR][1000 genomes];1.00[AMR][1000 genomes] |
| rs73747849 | 1.00[AFR][1000 genomes];1.00[AMR][1000 genomes] |
| rs73747850 | 1.00[AFR][1000 genomes];1.00[AMR][1000 genomes] |
| rs73747866 | 0.81[AFR][1000 genomes];1.00[AMR][1000 genomes] |
| rs7758581 | 0.88[AFR][1000 genomes];1.00[AMR][1000 genomes] |
Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page:
1
| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | nsv470831 | chr6:69581991-69654650 | Weak transcription Enhancers ZNF genes & repeats Strong transcription | Chromatin interactive region | n/a | inside rSNPs | diseases |
| 2 | nsv886136 | chr6:69598297-69654650 | Weak transcription Strong transcription ZNF genes & repeats Enhancers | Chromatin interactive region | n/a | inside rSNPs | diseases |
| 3 | nsv525968 | chr6:69618480-69638504 | Enhancers Weak transcription | Chromatin interactive region | n/a | inside rSNPs | diseases |
| 4 | nsv519494 | chr6:69619007-69638504 | Enhancers Weak transcription | Chromatin interactive region | n/a | inside rSNPs | diseases |
| 5 | esv3339572 | chr6:69620331-69624529 | Weak transcription Enhancers | n/a | n/a | inside rSNPs | diseases |
| No data |
| No. | Chromosome Location | Chromatin state | Cell line | Tissue |
|---|---|---|---|---|
| 1 | chr6:69621200-69622000 | Enhancers | Foreskin Melanocyte Primary Cells skin03 | Skin |
