Variant report

Variant	rs59880009
Chromosome Location	chr6:69645078-69645079
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 20 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:18)

rs_ID	r²[population]
rs12177776	1.00[AMR][1000 genomes]
rs16900236	1.00[AMR][1000 genomes]
rs55923342	1.00[AMR][1000 genomes]
rs60936330	1.00[AMR][1000 genomes]
rs6924584	1.00[AMR][1000 genomes]
rs73745892	1.00[AMR][1000 genomes]
rs73745893	1.00[AMR][1000 genomes]
rs73745900	1.00[AMR][1000 genomes]
rs73745907	1.00[AMR][1000 genomes]
rs73745913	1.00[AMR][1000 genomes]
rs73747807	1.00[AMR][1000 genomes]
rs73747810	1.00[AMR][1000 genomes]
rs73747812	1.00[AMR][1000 genomes]
rs73747822	1.00[AMR][1000 genomes]
rs73747849	1.00[AMR][1000 genomes]
rs73747850	1.00[AMR][1000 genomes]
rs73747866	1.00[AMR][1000 genomes]
rs7758581	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv470831	chr6:69581991-69654650	Weak transcription Enhancers ZNF genes & repeats Strong transcription	Chromatin interactive region	n/a	inside rSNPs	diseases
2	nsv886136	chr6:69598297-69654650	Weak transcription Strong transcription ZNF genes & repeats Enhancers	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:4 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:69643200-69646800	Weak transcription	Cortex derived primary cultured neurospheres	brain
2	chr6:69644000-69653600	Weak transcription	Brain Substantia Nigra	brain
3	chr6:69644000-69653800	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
4	chr6:69644600-69665800	Weak transcription	Brain Inferior Temporal Lobe	brain

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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