Variant report

Variant	rs73747807
Chromosome Location	chr6:69561488-69561489
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 21 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:17)

rs_ID	r²[population]
rs16900236	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs55923342	1.00[AMR][1000 genomes]
rs59880009	1.00[AMR][1000 genomes]
rs60936330	1.00[AMR][1000 genomes]
rs6924584	1.00[AMR][1000 genomes]
rs73745892	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73745893	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73745900	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73745907	1.00[AMR][1000 genomes]
rs73745913	1.00[AMR][1000 genomes]
rs73747810	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73747812	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73747822	1.00[AMR][1000 genomes]
rs73747849	1.00[AMR][1000 genomes]
rs73747850	1.00[AMR][1000 genomes]
rs73747866	1.00[AMR][1000 genomes]
rs7758581	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv886132	chr6:69487204-69610281	Enhancers ZNF genes & repeats Weak transcription Active TSS Flanking Active TSS Strong transcription Flanking Bivalent TSS/Enh Bivalent Enhancer	Chromatin interactive region	3 gene(s)	inside rSNPs	diseases
2	nsv886133	chr6:69549897-69610281	Weak transcription Enhancers ZNF genes & repeats Strong transcription	Chromatin interactive region	n/a	inside rSNPs	diseases
3	nsv1020792	chr6:69555181-69578740	Weak transcription Enhancers Strong transcription ZNF genes & repeats	Chromatin interactive region	n/a	inside rSNPs	diseases
4	nsv1025548	chr6:69555181-69589956	Enhancers Weak transcription ZNF genes & repeats Strong transcription	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:69556600-69562400	Weak transcription	Cortex derived primary cultured neurospheres	brain
2	chr6:69557400-69566800	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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