Variant report

Variant	rs55932161
Chromosome Location	chr11:72876351-72876352
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr11:72875399..72877502-chr11:72883167..72886106,3	K562	blood:
2	chr11:72871963..72873973-chr11:72874457..72877070,2	MCF-7	breast:
3	chr11:72870371..72871885-chr11:72874212..72876545,2	MCF-7	breast:
4	chr11:72874691..72878123-chr11:72880193..72884667,5	K562	blood:

Extended variants
information (count: 8 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:5)

rs_ID	r²[population]
rs55797855	0.97[AFR][1000 genomes]
rs55956429	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs56332894	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs57027900	0.89[AFR][1000 genomes]
rs7940725	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1053737	chr11:72838564-72956847	Weak transcription Enhancers Bivalent Enhancer Flanking Active TSS Strong transcription Flanking Bivalent TSS/Enh Active TSS Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	30 gene(s)	inside rSNPs	diseases
2	nsv386	chr11:72849097-72893807	Enhancers Weak transcription Flanking Active TSS Strong transcription Active TSS Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	19 gene(s)	inside rSNPs	diseases
3	nsv832208	chr11:72876184-73091003	Enhancers Active TSS Weak transcription Strong transcription Genic enhancers Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	54 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:31 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:72870400-72878200	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
2	chr11:72870800-72880200	Enhancers	HepG2	liver
3	chr11:72871200-72879800	Weak transcription	Skeletal Muscle Male	skeletal muscle
4	chr11:72871600-72880000	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
5	chr11:72871800-72880000	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
6	chr11:72873200-72876400	Enhancers	Placenta	Placenta
7	chr11:72873200-72876600	Enhancers	Primary B cells from peripheral blood	blood
8	chr11:72873400-72876400	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
9	chr11:72873400-72876400	Enhancers	Left Ventricle	heart
10	chr11:72873800-72876400	Enhancers	Fetal Intestine Large	intestine
11	chr11:72873800-72878200	Weak transcription	HUVEC	blood vessel
12	chr11:72873800-72880000	Weak transcription	Lung	lung
13	chr11:72874200-72878800	Weak transcription	Spleen	Spleen
14	chr11:72875000-72878200	Weak transcription	Right Ventricle	heart
15	chr11:72875200-72880000	Weak transcription	HSMMtube	muscle
16	chr11:72875400-72876400	Enhancers	Primary hematopoietic stem cells short term culture	blood
17	chr11:72875400-72878200	Weak transcription	Ovary	ovary
18	chr11:72875400-72884800	Weak transcription	Adipose Nuclei	Adipose
19	chr11:72875600-72876400	Enhancers	K562	blood
20	chr11:72875800-72876400	Enhancers	GM12878-XiMat	blood
21	chr11:72876000-72876400	Enhancers	Fetal Muscle Leg	muscle
22	chr11:72876000-72876600	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
23	chr11:72876000-72876800	Enhancers	Primary B cells from cord blood	blood
24	chr11:72876000-72877200	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
25	chr11:72876000-72877200	Weak transcription	Liver	Liver
26	chr11:72876200-72876400	Enhancers	Primary monocytes fromperipheralblood	blood
27	chr11:72876200-72876600	Enhancers	ES-I3 Cell Line	embryonic stem cell
28	chr11:72876200-72876600	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
29	chr11:72876200-72876600	Enhancers	Primary hematopoietic stem cells	blood
30	chr11:72876200-72878200	Weak transcription	Fetal Heart	heart
31	chr11:72876200-72878600	Weak transcription	Right Atrium	heart

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