Variant report

Variant	rs56332894
Chromosome Location	chr11:72877505-72877506
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr11:72877096..72877897-chr4:137423606..137424110,2	MCF-7	breast:
2	chr11:72874691..72878123-chr11:72880193..72884667,5	K562	blood:

Extended variants
information (count: 8 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:5)

rs_ID	r²[population]
rs55797855	0.94[AFR][1000 genomes]
rs55932161	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs55956429	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs57027900	0.86[AFR][1000 genomes]
rs7940725	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1053737	chr11:72838564-72956847	Weak transcription Enhancers Bivalent Enhancer Flanking Active TSS Strong transcription Flanking Bivalent TSS/Enh Active TSS Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	30 gene(s)	inside rSNPs	diseases
2	nsv386	chr11:72849097-72893807	Enhancers Weak transcription Flanking Active TSS Strong transcription Active TSS Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	19 gene(s)	inside rSNPs	diseases
3	nsv832208	chr11:72876184-73091003	Enhancers Active TSS Weak transcription Strong transcription Genic enhancers Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	54 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:28 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:72870400-72878200	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
2	chr11:72870800-72880200	Enhancers	HepG2	liver
3	chr11:72871200-72879800	Weak transcription	Skeletal Muscle Male	skeletal muscle
4	chr11:72871600-72880000	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
5	chr11:72871800-72880000	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
6	chr11:72873800-72878200	Weak transcription	HUVEC	blood vessel
7	chr11:72873800-72880000	Weak transcription	Lung	lung
8	chr11:72874200-72878800	Weak transcription	Spleen	Spleen
9	chr11:72875000-72878200	Weak transcription	Right Ventricle	heart
10	chr11:72875200-72880000	Weak transcription	HSMMtube	muscle
11	chr11:72875400-72878200	Weak transcription	Ovary	ovary
12	chr11:72875400-72884800	Weak transcription	Adipose Nuclei	Adipose
13	chr11:72876200-72878200	Weak transcription	Fetal Heart	heart
14	chr11:72876200-72878600	Weak transcription	Right Atrium	heart
15	chr11:72876400-72877800	Weak transcription	GM12878-XiMat	blood
16	chr11:72876400-72878200	Weak transcription	Primary hematopoietic stem cells short term culture	blood
17	chr11:72876400-72878400	Weak transcription	Left Ventricle	heart
18	chr11:72876400-72878600	Weak transcription	Fetal Muscle Leg	muscle
19	chr11:72876400-72880000	Weak transcription	Placenta	Placenta
20	chr11:72876400-72882600	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
21	chr11:72876600-72878200	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
22	chr11:72876600-72878400	Weak transcription	Primary B cells from peripheral blood	blood
23	chr11:72876600-72878400	Weak transcription	Primary hematopoietic stem cells	blood
24	chr11:72876600-72880200	Weak transcription	ES-I3 Cell Line	embryonic stem cell
25	chr11:72876600-72880400	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
26	chr11:72876800-72886800	Weak transcription	Primary B cells from cord blood	blood
27	chr11:72877200-72878600	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
28	chr11:72877200-72879400	Enhancers	Liver	Liver

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