Variant report

Variant	rs7940725
Chromosome Location	chr11:72872388-72872389
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr11:72871963..72873973-chr11:72874457..72877070,2	MCF-7	breast:
2	chr11:72853695..72855997-chr11:72872214..72873904,2	K562	blood:

Extended variants
information (count: 12 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:10)

rs_ID	r²[population]
rs11821736	1.00[MEX][hapmap]
rs11825858	1.00[MEX][hapmap]
rs12421033	0.96[MKK][hapmap]
rs55797855	0.98[AFR][1000 genomes]
rs55932161	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs55956429	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs56332894	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs57027900	0.90[AFR][1000 genomes]
rs7108924	1.00[MEX][hapmap]
rs7931533	0.82[MKK][hapmap]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1053737	chr11:72838564-72956847	Weak transcription Enhancers Bivalent Enhancer Flanking Active TSS Strong transcription Flanking Bivalent TSS/Enh Active TSS Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	30 gene(s)	inside rSNPs	diseases
2	nsv386	chr11:72849097-72893807	Enhancers Weak transcription Flanking Active TSS Strong transcription Active TSS Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	19 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:35 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:72869400-72873200	Weak transcription	Primary neutrophils fromperipheralblood	blood
2	chr11:72869800-72873200	Weak transcription	Thymus	Thymus
3	chr11:72869800-72874600	Weak transcription	Aorta	Aorta
4	chr11:72869800-72874600	Weak transcription	Ovary	ovary
5	chr11:72870200-72873200	Weak transcription	Monocytes-CD14+_RO01746	blood
6	chr11:72870200-72873400	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
7	chr11:72870200-72875000	Weak transcription	Adipose Nuclei	Adipose
8	chr11:72870200-72875200	Weak transcription	Liver	Liver
9	chr11:72870400-72878200	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
10	chr11:72870600-72873400	Weak transcription	Lung	lung
11	chr11:72870800-72873000	Weak transcription	Primary monocytes fromperipheralblood	blood
12	chr11:72870800-72880200	Enhancers	HepG2	liver
13	chr11:72871000-72873600	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
14	chr11:72871000-72876000	Weak transcription	Fetal Muscle Leg	muscle
15	chr11:72871200-72873000	Weak transcription	Primary hematopoietic stem cells short term culture	blood
16	chr11:72871200-72874800	Weak transcription	Stomach Smooth Muscle	stomach
17	chr11:72871200-72879800	Weak transcription	Skeletal Muscle Male	skeletal muscle
18	chr11:72871400-72873200	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
19	chr11:72871400-72873600	Weak transcription	Spleen	Spleen
20	chr11:72871400-72874600	Weak transcription	HSMMtube	muscle
21	chr11:72871400-72874800	Weak transcription	Right Atrium	heart
22	chr11:72871600-72873200	Weak transcription	Right Ventricle	heart
23	chr11:72871600-72880000	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
24	chr11:72871800-72872400	Weak transcription	GM12878-XiMat	blood
25	chr11:72871800-72873000	Weak transcription	Primary B cells from cord blood	blood
26	chr11:72871800-72873200	Weak transcription	Placenta	Placenta
27	chr11:72871800-72873200	Weak transcription	K562	blood
28	chr11:72871800-72873400	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
29	chr11:72871800-72873400	Weak transcription	Left Ventricle	heart
30	chr11:72871800-72874800	Weak transcription	Placenta Amnion	Placenta Amnion
31	chr11:72871800-72875000	Weak transcription	Fetal Intestine Small	intestine
32	chr11:72871800-72875800	Weak transcription	Fetal Heart	heart
33	chr11:72871800-72880000	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
34	chr11:72872000-72873800	Weak transcription	Fetal Intestine Large	intestine
35	chr11:72872200-72873200	Weak transcription	Primary B cells from peripheral blood	blood

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