Variant report
| Variant | rs55935462 |
|---|---|
| Chromosome Location | chr9:72298318-72298319 |
| allele | A/C/G |
| Outlinks | Ensembl UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:1)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
| No data |
| No data |
(count:1 , 50 per page) page:
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| No. | Distal block | Cell Line | Cell type | Cell Stage |
|---|---|---|---|---|
| 1 | chr9:72286480..72288672-chr9:72297057..72299109,2 | MCF-7 | breast: |
| No data |
| No data |
| No data |
| Variant related genes | Relation type |
|---|---|
| ENSG00000107282 | Chromatin interaction |
| ENSG00000261447 | Chromatin interaction |
rSNPs within LD-proxies of this variant (count:14)
| rs_ID | r2[population] |
|---|---|
| rs56282813 | 0.87[AFR][1000 genomes];1.00[AMR][1000 genomes] |
| rs60544576 | 1.00[AMR][1000 genomes] |
| rs60814527 | 1.00[AMR][1000 genomes] |
| rs61068557 | 1.00[AFR][1000 genomes];1.00[AMR][1000 genomes] |
| rs73444509 | 1.00[AMR][1000 genomes] |
| rs73444511 | 1.00[AMR][1000 genomes] |
| rs73444521 | 1.00[AMR][1000 genomes] |
| rs73444537 | 1.00[AMR][1000 genomes] |
| rs73461031 | 1.00[AMR][1000 genomes] |
| rs73461052 | 1.00[AMR][1000 genomes] |
| rs73461069 | 1.00[AMR][1000 genomes] |
| rs73461071 | 1.00[AMR][1000 genomes] |
| rs73647272 | 1.00[AMR][1000 genomes] |
| rs73647274 | 1.00[AMR][1000 genomes] |
Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page:
1
| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | nsv471309 | chr9:72273898-72410323 | Weak transcription Genic enhancers Strong transcription Enhancers Flanking Active TSS Bivalent Enhancer Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS | TF binding regionCpG islandChromatin interactive regionlncRNAmiRNA target site | 10 gene(s) | inside rSNPs | diseases |
| 2 | esv3397197 | chr9:72298160-72299128 | Inactive region | Chromatin interactive region | 2 gene(s) | inside rSNPs | diseases |
| 3 | esv3327668 | chr9:72298252-72298740 | Inactive region | Chromatin interactive region | 2 gene(s) | inside rSNPs | diseases |
| No data |
Chromatin state (count:0 , 50 per page) page:
| No data |
