Variant report

Variant	rs60814527
Chromosome Location	chr9:72312299-72312300
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 16 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:14)

rs_ID	r²[population]
rs55935462	1.00[AMR][1000 genomes]
rs56282813	1.00[AMR][1000 genomes]
rs60544576	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs61068557	1.00[AMR][1000 genomes]
rs73444509	1.00[AMR][1000 genomes]
rs73444511	1.00[AMR][1000 genomes]
rs73444521	1.00[AMR][1000 genomes]
rs73444537	1.00[AMR][1000 genomes]
rs73461031	1.00[AMR][1000 genomes]
rs73461052	1.00[AMR][1000 genomes]
rs73461069	1.00[AMR][1000 genomes]
rs73461071	1.00[AMR][1000 genomes]
rs73647272	0.85[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73647274	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv471309	chr9:72273898-72410323	Weak transcription Genic enhancers Strong transcription Enhancers Flanking Active TSS Bivalent Enhancer Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	10 gene(s)	inside rSNPs	diseases
2	nsv1048622	chr9:72303617-72371795	Weak transcription Strong transcription Genic enhancers Enhancers Active TSS ZNF genes & repeats Flanking Active TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region miRNA target site	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:72312000-72312400	ZNF genes & repeats	Duodenum Smooth Muscle	Duodenum

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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