Variant report

Variant	rs73461071
Chromosome Location	chr9:72332902-72332903
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 18 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:16)

rs_ID	r²[population]
rs55935462	1.00[AMR][1000 genomes]
rs56282813	1.00[AMR][1000 genomes]
rs60544576	1.00[AMR][1000 genomes]
rs60814527	1.00[AMR][1000 genomes]
rs61068557	1.00[AMR][1000 genomes]
rs62571863	0.82[AFR][1000 genomes]
rs73444509	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73444511	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73444521	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73444537	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73461031	0.82[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73461052	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73461069	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73461076	0.91[AFR][1000 genomes]
rs73647272	1.00[AMR][1000 genomes]
rs73647274	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv471309	chr9:72273898-72410323	Weak transcription Genic enhancers Strong transcription Enhancers Flanking Active TSS Bivalent Enhancer Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	10 gene(s)	inside rSNPs	diseases
2	nsv1048622	chr9:72303617-72371795	Weak transcription Strong transcription Genic enhancers Enhancers Active TSS ZNF genes & repeats Flanking Active TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region miRNA target site	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:124 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:72313000-72333200	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
2	chr9:72319400-72336600	Weak transcription	NHDF-Ad	bronchial
3	chr9:72321400-72333200	Weak transcription	Brain Substantia Nigra	brain
4	chr9:72321600-72334400	Weak transcription	ES-I3 Cell Line	embryonic stem cell
5	chr9:72321600-72335400	Weak transcription	Muscle Satellite Cultured Cells	--
6	chr9:72321800-72333200	Weak transcription	NHLF	lung
7	chr9:72322000-72333000	Weak transcription	Thymus	Thymus
8	chr9:72322200-72338000	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
9	chr9:72322600-72333200	Weak transcription	A549	lung
10	chr9:72322800-72333200	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
11	chr9:72323200-72338000	Weak transcription	iPS-15b Cell Line	embryonic stem cell
12	chr9:72323600-72344400	Weak transcription	NHEK	skin
13	chr9:72323600-72360800	Strong transcription	HUES64 Cell Line	embryonic stem cell
14	chr9:72323800-72357600	Strong transcription	Monocytes-CD14+_RO01746	blood
15	chr9:72324000-72335000	Strong transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
16	chr9:72324200-72333200	Weak transcription	HSMM	muscle
17	chr9:72324200-72361000	Strong transcription	iPS-20b Cell Line	embryonic stem cell
18	chr9:72324600-72335400	Strong transcription	Primary monocytes fromperipheralblood	blood
19	chr9:72324600-72359800	Strong transcription	HUES48 Cell Line	embryonic stem cell
20	chr9:72324800-72333200	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
21	chr9:72324800-72345200	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
22	chr9:72325000-72340400	Strong transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
23	chr9:72325000-72358800	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
24	chr9:72325400-72337800	Strong transcription	H9 Derived Neuron Cultured Cells	ES cell derived
25	chr9:72325400-72346200	Weak transcription	Primary T killer memory cells from peripheral blood	blood
26	chr9:72326000-72333200	Weak transcription	HSMMtube	muscle
27	chr9:72326000-72333800	Strong transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
28	chr9:72326000-72339800	Strong transcription	iPS-18 Cell Line	embryonic stem cell
29	chr9:72326000-72345000	Weak transcription	Rectal Smooth Muscle	rectum
30	chr9:72326600-72344600	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
31	chr9:72326600-72346400	Weak transcription	Small Intestine	intestine
32	chr9:72327000-72333800	Strong transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
33	chr9:72327200-72336400	Strong transcription	Breast Myoepithelial Primary Cells	Breast
34	chr9:72327800-72333600	Strong transcription	Liver	Liver
35	chr9:72327800-72366800	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
36	chr9:72328000-72333600	Strong transcription	H1 Cell Line	embryonic stem cell
37	chr9:72328000-72345000	Weak transcription	Brain Cingulate Gyrus	brain
38	chr9:72328200-72333000	Weak transcription	Osteobl	bone
39	chr9:72328200-72333400	Strong transcription	Primary hematopoietic stem cells	blood
40	chr9:72328600-72341000	Strong transcription	Fetal Thymus	thymus
41	chr9:72329000-72336000	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
42	chr9:72329000-72344400	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
43	chr9:72329200-72335200	Weak transcription	Psoas Muscle	Psoas
44	chr9:72329400-72338800	Strong transcription	Skeletal Muscle Female	skeletal muscle
45	chr9:72329400-72339600	Strong transcription	Primary T cells from cord blood	blood
46	chr9:72329600-72333600	Strong transcription	Primary B cells from peripheral blood	blood
47	chr9:72329600-72345000	Weak transcription	Colon Smooth Muscle	Colon
48	chr9:72329800-72333800	Strong transcription	Primary T cells fromperipheralblood	blood
49	chr9:72330000-72334400	Strong transcription	Foreskin Melanocyte Primary Cells skin03	Skin
50	chr9:72330000-72335800	Weak transcription	Fetal Brain Male	brain

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