Variant report
| Variant | rs55945877 |
|---|---|
| Chromosome Location | chr3:24386481-24386482 |
| allele | A/G |
| Outlinks | Ensembl UCSC |
| No. | Chromosome Location | Chromatin state | Cell line | Tissue |
|---|---|---|---|---|
| 1 | chr3:24357200-24393000 | Weak transcription | Esophagus | oesophagus |
| 2 | chr3:24360400-24418000 | Weak transcription | H1 BMP4 Derived Trophoblast Cultured Cells | ES cell derived |
| 3 | chr3:24372400-24393200 | Weak transcription | Fetal Stomach | stomach |
| 4 | chr3:24377800-24390000 | Weak transcription | Right Atrium | heart |
| 5 | chr3:24379600-24393200 | Weak transcription | Gastric | stomach |
| 6 | chr3:24380200-24386600 | Weak transcription | Brain Cingulate Gyrus | brain |
| 7 | chr3:24381000-24387400 | Enhancers | Colon Smooth Muscle | Colon |
| 8 | chr3:24381000-24394800 | Weak transcription | Brain Germinal Matrix | brain |
| 9 | chr3:24381800-24393200 | Weak transcription | Stomach Mucosa | stomach |
| 10 | chr3:24382200-24386600 | Weak transcription | Duodenum Smooth Muscle | Duodenum |
| 11 | chr3:24383600-24387000 | Weak transcription | Skeletal Muscle Male | skeletal muscle |
| 12 | chr3:24384200-24386800 | Enhancers | NHLF | lung |
| 13 | chr3:24384200-24389800 | Weak transcription | Aorta | Aorta |
| 14 | chr3:24384400-24393000 | Weak transcription | Brain Dorsolateral Prefrontal Cortex | brain |
| 15 | chr3:24384400-24393200 | Weak transcription | Right Ventricle | heart |
| 16 | chr3:24384800-24386600 | Weak transcription | Duodenum Mucosa | Duodenum |
| 17 | chr3:24384800-24386600 | Weak transcription | Stomach Smooth Muscle | stomach |
| 18 | chr3:24384800-24393000 | Weak transcription | Psoas Muscle | Psoas |
| 19 | chr3:24385000-24393200 | Weak transcription | Fetal Intestine Small | intestine |
| 20 | chr3:24385200-24393000 | Weak transcription | Breast variant Human Mammary Epithelial Cells (vHMEC) | Breast |
| 21 | chr3:24385400-24386600 | Weak transcription | Brain Substantia Nigra | brain |
| 22 | chr3:24385800-24386600 | Weak transcription | Breast Myoepithelial Primary Cells | Breast |
| 23 | chr3:24385800-24386600 | Enhancers | Liver | Liver |
| 24 | chr3:24385800-24387000 | Enhancers | Fetal Lung | lung |
| 25 | chr3:24385800-24387000 | Enhancers | Skeletal Muscle Female | skeletal muscle |
| 26 | chr3:24385800-24387200 | Enhancers | Cortex derived primary cultured neurospheres | brain |
| 27 | chr3:24385800-24389400 | Weak transcription | K562 | blood |
| 28 | chr3:24386200-24386800 | Enhancers | Adipose Derived Mesenchymal Stem Cell Cultured Cells | ES cell derived |
| 29 | chr3:24386200-24387000 | Enhancers | Adipose Nuclei | Adipose |
| 30 | chr3:24386400-24386600 | Enhancers | Pancreas | Pancrea |
| 31 | chr3:24386400-24386800 | Flanking Active TSS | Mesenchymal Stem Cell Derived Adipocyte Cultured Cells | ES cell derived |
| 32 | chr3:24386400-24386800 | Flanking Active TSS | Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells | embryonic stem cell |
| 33 | chr3:24386400-24386800 | Flanking Active TSS | Brain Hippocampus Middle | brain |
| 34 | chr3:24386400-24387000 | Enhancers | Brain Anterior Caudate | brain |
| 35 | chr3:24386400-24387000 | Enhancers | Small Intestine | intestine |
| 36 | chr3:24386400-24387200 | Enhancers | Rectal Smooth Muscle | rectum |
