Variant report

Variant	rs73041663
Chromosome Location	chr3:24389624-24389625
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr3:24385945..24388354-chr3:24389549..24391848,2	K562	blood:
2	chr3:24388234..24394796-chr3:24535666..24539509,6	K562	blood:
3	chr3:24388557..24390689-chr3:24390723..24393005,2	K562	blood:
4	chr3:24387428..24390006-chr3:24393507..24395271,2	K562	blood:

Variant related genes	Relation type
ENSG00000151090	Chromatin interaction
ENSG00000228791	Chromatin interaction

Extended variants
information (count: 16 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:15)

rs_ID	r²[population]
rs17014584	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs55751089	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs55889875	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs55945877	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs55983102	1.00[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs56976952	0.82[EUR][1000 genomes]
rs73041657	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73041659	1.00[EUR][1000 genomes]
rs73043726	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73043728	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73043745	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73043748	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73043750	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73043760	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73043761	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv834640	chr3:24339779-24493605	Enhancers Active TSS Weak transcription ZNF genes & repeats Strong transcription Genic enhancers Flanking Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:25 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:24357200-24393000	Weak transcription	Esophagus	oesophagus
2	chr3:24360400-24418000	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
3	chr3:24372400-24393200	Weak transcription	Fetal Stomach	stomach
4	chr3:24377800-24390000	Weak transcription	Right Atrium	heart
5	chr3:24379600-24393200	Weak transcription	Gastric	stomach
6	chr3:24381000-24394800	Weak transcription	Brain Germinal Matrix	brain
7	chr3:24381800-24393200	Weak transcription	Stomach Mucosa	stomach
8	chr3:24384200-24389800	Weak transcription	Aorta	Aorta
9	chr3:24384400-24393000	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
10	chr3:24384400-24393200	Weak transcription	Right Ventricle	heart
11	chr3:24384800-24393000	Weak transcription	Psoas Muscle	Psoas
12	chr3:24385000-24393200	Weak transcription	Fetal Intestine Small	intestine
13	chr3:24385200-24393000	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
14	chr3:24386600-24389800	Weak transcription	Pancreas	Pancrea
15	chr3:24386600-24393200	Weak transcription	Sigmoid Colon	Sigmoid Colon
16	chr3:24386800-24392800	Weak transcription	Stomach Smooth Muscle	stomach
17	chr3:24387000-24392800	Weak transcription	Skeletal Muscle Female	skeletal muscle
18	chr3:24387000-24393200	Weak transcription	Duodenum Smooth Muscle	Duodenum
19	chr3:24387200-24392000	Weak transcription	Rectal Smooth Muscle	rectum
20	chr3:24387200-24392800	Weak transcription	Liver	Liver
21	chr3:24387400-24392600	Weak transcription	Colon Smooth Muscle	Colon
22	chr3:24388400-24393000	Weak transcription	Fetal Intestine Large	intestine
23	chr3:24389600-24389800	Flanking Active TSS	K562	blood
24	chr3:24389600-24390200	Enhancers	Breast Myoepithelial Primary Cells	Breast
25	chr3:24389600-24391200	Enhancers	iPS-15b Cell Line	embryonic stem cell

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links