Variant report

Variant	rs55958453
Chromosome Location	chr6:164522972-164522973
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr6:163837764..163839976-chr6:164521625..164524241,2	K562	blood:

Extended variants
information (count: 11 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:5)

rs_ID	r²[population]
rs13205991	0.89[AFR][1000 genomes];0.95[ASN][1000 genomes]
rs206701	0.92[ASN][1000 genomes]
rs206709	0.90[ASN][1000 genomes]
rs9456927	0.90[AFR][1000 genomes];0.95[ASN][1000 genomes]
rs9458985	0.94[AFR][1000 genomes];0.95[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1018860	chr6:163939347-164532579	Flanking Active TSS Enhancers Weak transcription ZNF genes & repeats Active TSS Genic enhancers Strong transcription Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	14 gene(s)	inside rSNPs	diseases
2	nsv538526	chr6:163939347-164532579	Weak transcription Enhancers Active TSS Flanking Active TSS Genic enhancers Flanking Bivalent TSS/Enh Strong transcription Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	14 gene(s)	inside rSNPs	diseases
3	nsv1026707	chr6:164188210-164749206	Enhancers Weak transcription ZNF genes & repeats Active TSS Flanking Active TSS Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh Genic enhancers Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
4	nsv538527	chr6:164188210-164749206	Weak transcription Enhancers Active TSS Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS Genic enhancers Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
5	nsv1029952	chr6:164463355-165268911	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats Bivalent Enhancer Genic enhancers Strong transcription Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases
6	esv3400983	chr6:164521187-164523735	Enhancers Weak transcription Active TSS Flanking Active TSS Bivalent Enhancer	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:44 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:164506400-164530200	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
2	chr6:164518800-164523000	Weak transcription	iPS-18 Cell Line	embryonic stem cell
3	chr6:164519000-164528400	Weak transcription	Psoas Muscle	Psoas
4	chr6:164519800-164525000	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
5	chr6:164520200-164523000	Weak transcription	HSMM	muscle
6	chr6:164520200-164528600	Weak transcription	Esophagus	oesophagus
7	chr6:164520400-164523400	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
8	chr6:164520400-164529200	Weak transcription	Adipose Nuclei	Adipose
9	chr6:164520800-164523800	Weak transcription	Skeletal Muscle Female	skeletal muscle
10	chr6:164521000-164523000	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
11	chr6:164521000-164523000	Weak transcription	Brain Angular Gyrus	brain
12	chr6:164521000-164523800	Weak transcription	Fetal Brain Female	brain
13	chr6:164521000-164524800	Weak transcription	Fetal Muscle Leg	muscle
14	chr6:164521600-164523400	Weak transcription	Brain Cingulate Gyrus	brain
15	chr6:164521600-164523400	Weak transcription	Fetal Brain Male	brain
16	chr6:164521800-164523000	Weak transcription	Fetal Heart	heart
17	chr6:164521800-164523000	Enhancers	Right Ventricle	heart
18	chr6:164522400-164523000	Enhancers	iPS DF 19.11 Cell Line	embryonic stem cell
19	chr6:164522400-164524200	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
20	chr6:164522600-164523000	Enhancers	Fetal Muscle Trunk	muscle
21	chr6:164522600-164523000	Enhancers	Lung	lung
22	chr6:164522600-164523200	Enhancers	Left Ventricle	heart
23	chr6:164522600-164525600	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
24	chr6:164522800-164523000	Enhancers	Foreskin Melanocyte Primary Cells skin01	Skin
25	chr6:164522800-164523000	Bivalent Enhancer	Fetal Adrenal Gland	Adrenal Gland
26	chr6:164522800-164523000	Enhancers	Spleen	Spleen
27	chr6:164522800-164523200	Enhancers	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
28	chr6:164522800-164523200	Enhancers	Right Atrium	heart
29	chr6:164522800-164523400	Enhancers	Brain Dorsolateral Prefrontal Cortex	brain
30	chr6:164522800-164523600	Enhancers	iPS DF 6.9 Cell Line	embryonic stem cell
31	chr6:164522800-164523800	Enhancers	Brain Anterior Caudate	brain
32	chr6:164522800-164523800	Enhancers	Skeletal Muscle Male	skeletal muscle
33	chr6:164522800-164523800	Enhancers	HUVEC	blood vessel
34	chr6:164522800-164524000	Enhancers	HUES6 Cell Line	embryonic stem cell
35	chr6:164522800-164524000	Enhancers	iPS-20b Cell Line	embryonic stem cell
36	chr6:164522800-164524000	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
37	chr6:164522800-164524000	Enhancers	Ganglion Eminence derived primary cultured neurospheres	brain
38	chr6:164522800-164524000	Enhancers	Brain Hippocampus Middle	brain
39	chr6:164522800-164524000	Enhancers	Brain Inferior Temporal Lobe	brain
40	chr6:164522800-164524000	Enhancers	Brain Substantia Nigra	brain
41	chr6:164522800-164524200	Enhancers	HUES64 Cell Line	embryonic stem cell
42	chr6:164522800-164524200	Enhancers	Cortex derived primary cultured neurospheres	brain
43	chr6:164522800-164524800	Enhancers	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
44	chr6:164522800-164525200	Enhancers	Brain Germinal Matrix	brain

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