Variant report

Variant	rs9458985
Chromosome Location	chr6:164524849-164524850
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 17 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:12)

rs_ID	r²[population]
rs10945953	0.82[CHB][hapmap]
rs11754236	1.00[JPT][hapmap]
rs13205991	0.95[AFR][1000 genomes];0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs206701	1.00[CHB][hapmap];1.00[JPT][hapmap];0.92[ASN][1000 genomes]
rs206709	0.90[ASN][1000 genomes]
rs55958453	0.94[AFR][1000 genomes];0.95[ASN][1000 genomes]
rs9456927	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9456928	1.00[JPT][hapmap]
rs9456929	1.00[JPT][hapmap]
rs9456930	1.00[JPT][hapmap]
rs9458986	1.00[JPT][hapmap]
rs9458989	1.00[JPT][hapmap]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1018860	chr6:163939347-164532579	Flanking Active TSS Enhancers Weak transcription ZNF genes & repeats Active TSS Genic enhancers Strong transcription Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	14 gene(s)	inside rSNPs	diseases
2	nsv538526	chr6:163939347-164532579	Weak transcription Enhancers Active TSS Flanking Active TSS Genic enhancers Flanking Bivalent TSS/Enh Strong transcription Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	14 gene(s)	inside rSNPs	diseases
3	nsv1026707	chr6:164188210-164749206	Enhancers Weak transcription ZNF genes & repeats Active TSS Flanking Active TSS Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh Genic enhancers Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
4	nsv538527	chr6:164188210-164749206	Weak transcription Enhancers Active TSS Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS Genic enhancers Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
5	nsv1029952	chr6:164463355-165268911	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats Bivalent Enhancer Genic enhancers Strong transcription Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:23 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:164506400-164530200	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
2	chr6:164519000-164528400	Weak transcription	Psoas Muscle	Psoas
3	chr6:164519800-164525000	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
4	chr6:164520200-164528600	Weak transcription	Esophagus	oesophagus
5	chr6:164520400-164529200	Weak transcription	Adipose Nuclei	Adipose
6	chr6:164522600-164525600	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
7	chr6:164522800-164525200	Enhancers	Brain Germinal Matrix	brain
8	chr6:164523000-164526200	Enhancers	Fetal Heart	heart
9	chr6:164523000-164526200	Weak transcription	Right Ventricle	heart
10	chr6:164523000-164527200	Weak transcription	Fetal Muscle Trunk	muscle
11	chr6:164523200-164529400	Weak transcription	Right Atrium	heart
12	chr6:164523200-164530600	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
13	chr6:164523400-164536400	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
14	chr6:164523800-164525000	Enhancers	Skeletal Muscle Female	skeletal muscle
15	chr6:164523800-164526800	Weak transcription	Brain Anterior Caudate	brain
16	chr6:164523800-164527200	Weak transcription	Brain Cingulate Gyrus	brain
17	chr6:164523800-164527400	Weak transcription	Skeletal Muscle Male	skeletal muscle
18	chr6:164524000-164527800	Weak transcription	Brain Hippocampus Middle	brain
19	chr6:164524000-164529200	Weak transcription	Brain Substantia Nigra	brain
20	chr6:164524200-164526400	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
21	chr6:164524800-164525200	Weak transcription	Left Ventricle	heart
22	chr6:164524800-164526000	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
23	chr6:164524800-164531800	Enhancers	Fetal Muscle Leg	muscle

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