Variant report

Variant	rs55962685
Chromosome Location	chr3:28411727-28411728
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr3:28389727..28391641-chr3:28410342..28411907,2	K562	blood:

Variant related genes	Relation type
ENSG00000206559	Chromatin interaction
ENSG00000163512	Chromatin interaction

Extended variants
information (count: 104 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:101)

rs_ID	r²[population]
rs11915164	1.00[AMR][1000 genomes]
rs11915400	1.00[AMR][1000 genomes]
rs11916224	0.92[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs11918088	1.00[AMR][1000 genomes]
rs11918573	1.00[AMR][1000 genomes]
rs11919446	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs11923033	0.81[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs11923095	1.00[AMR][1000 genomes]
rs11923748	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs11926821	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs11926954	1.00[AMR][1000 genomes]
rs11927699	1.00[AMR][1000 genomes]
rs11929456	1.00[AMR][1000 genomes]
rs55634652	1.00[AMR][1000 genomes]
rs55650840	1.00[AMR][1000 genomes]
rs55758484	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs55817728	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs55861012	1.00[AMR][1000 genomes]
rs55934504	0.85[AMR][1000 genomes]
rs56082224	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs56196031	0.85[AMR][1000 genomes]
rs56199335	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs56361125	1.00[AMR][1000 genomes]
rs57400334	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs57850842	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs58272663	1.00[AMR][1000 genomes]
rs59066362	1.00[AMR][1000 genomes]
rs59284522	0.85[AMR][1000 genomes]
rs59337423	0.85[AMR][1000 genomes]
rs59962663	1.00[AMR][1000 genomes]
rs60023459	0.92[AFR][1000 genomes]
rs60355399	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs60984094	0.83[AMR][1000 genomes]
rs61588415	0.92[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs6794482	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs6800120	0.85[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs6800367	0.83[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs6804419	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73822579	0.87[AFR][1000 genomes]
rs73822639	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73822644	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73822646	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73822647	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73823975	0.83[AMR][1000 genomes]
rs73823977	0.85[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73823978	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73823979	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73823980	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73823981	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73823982	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73823983	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73823984	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73823985	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73823986	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73823988	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73823989	1.00[AMR][1000 genomes]
rs73823990	1.00[AMR][1000 genomes]
rs73823991	1.00[AMR][1000 genomes]
rs73823992	1.00[AMR][1000 genomes]
rs73823994	1.00[AMR][1000 genomes]
rs73823995	1.00[AMR][1000 genomes]
rs73823996	1.00[AMR][1000 genomes]
rs73823997	1.00[AMR][1000 genomes]
rs73823998	1.00[AMR][1000 genomes]
rs73823999	1.00[AMR][1000 genomes]
rs73824000	1.00[AMR][1000 genomes]
rs73824001	1.00[AMR][1000 genomes]
rs73825125	0.92[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs73825129	0.92[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs73825132	0.92[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs73825133	0.92[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs73825137	0.92[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs73825138	0.92[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs73825141	0.98[AFR][1000 genomes]
rs73825145	0.81[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73825155	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73825158	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73825159	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73825160	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73825164	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73826003	1.00[AMR][1000 genomes]
rs73826004	1.00[AMR][1000 genomes]
rs73826005	1.00[AMR][1000 genomes]
rs73826006	1.00[AMR][1000 genomes]
rs73826007	1.00[AMR][1000 genomes]
rs73826008	1.00[AMR][1000 genomes]
rs73826009	1.00[AMR][1000 genomes]
rs73826010	1.00[AMR][1000 genomes]
rs73826012	1.00[AMR][1000 genomes]
rs73826013	1.00[AMR][1000 genomes]
rs73826014	1.00[AMR][1000 genomes]
rs73826015	1.00[AMR][1000 genomes]
rs73826017	1.00[AMR][1000 genomes]
rs73826021	0.85[AMR][1000 genomes]
rs73826022	0.85[AMR][1000 genomes]
rs73826024	1.00[AMR][1000 genomes]
rs73826025	0.85[AMR][1000 genomes]
rs7620049	1.00[AMR][1000 genomes]
rs7627778	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7628073	1.00[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs7649677	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3328565	chr3:27991169-28915035	Weak transcription Enhancers Active TSS ZNF genes & repeats Flanking Active TSS Strong transcription Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	28 gene(s)	inside rSNPs	diseases
2	nsv876649	chr3:28126595-28718454	Enhancers Flanking Active TSS Strong transcription ZNF genes & repeats Weak transcription Bivalent Enhancer Active TSS Flanking Bivalent TSS/Enh Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	27 gene(s)	inside rSNPs	diseases
3	nsv979765	chr3:28401267-28427998	Enhancers Active TSS Weak transcription Flanking Active TSS	TF binding region Chromatin interactive region	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:28393800-28412200	Weak transcription	Pancreas	Pancrea

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