Variant report

Variant	rs56199335
Chromosome Location	chr3:28496680-28496681
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 104 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:98)

rs_ID	r²[population]
rs11915164	1.00[AMR][1000 genomes]
rs11915400	0.84[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs11916224	1.00[EUR][1000 genomes]
rs11918088	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs11918573	0.84[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs11919446	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs11923033	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs11923095	1.00[AMR][1000 genomes]
rs11923748	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs11926821	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs11926954	1.00[AMR][1000 genomes]
rs11927699	0.84[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs11929456	0.84[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs55634652	1.00[AMR][1000 genomes]
rs55650840	0.84[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs55758484	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs55817728	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs55861012	0.84[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs55934504	0.98[AFR][1000 genomes];0.85[AMR][1000 genomes]
rs55962685	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs56082224	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs56196031	0.85[AMR][1000 genomes]
rs56361125	0.84[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs57400334	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs57850842	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs58272663	0.84[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs59066362	1.00[AMR][1000 genomes]
rs59284522	0.86[AFR][1000 genomes];0.85[AMR][1000 genomes]
rs59337423	0.85[AMR][1000 genomes]
rs59962663	1.00[AMR][1000 genomes]
rs60355399	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs60984094	0.83[AMR][1000 genomes]
rs61588415	1.00[EUR][1000 genomes]
rs6794482	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs6800120	0.85[AFR][1000 genomes];0.85[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs6800367	0.94[AFR][1000 genomes];0.83[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs6804419	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73822639	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73822644	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73822646	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73822647	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73823975	0.83[AMR][1000 genomes]
rs73823977	0.85[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73823978	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73823979	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73823980	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73823981	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73823982	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73823983	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73823984	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73823985	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73823986	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73823988	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73823989	0.84[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73823990	0.84[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73823991	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73823992	0.84[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73823994	0.84[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73823995	0.84[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73823996	0.84[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73823997	0.84[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73823998	0.84[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73823999	0.84[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73824000	0.84[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73824001	0.84[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73825125	1.00[EUR][1000 genomes]
rs73825129	1.00[EUR][1000 genomes]
rs73825132	1.00[EUR][1000 genomes]
rs73825133	1.00[EUR][1000 genomes]
rs73825137	1.00[EUR][1000 genomes]
rs73825138	1.00[EUR][1000 genomes]
rs73825145	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73825155	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73825158	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73825159	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73825160	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73825164	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73826003	0.84[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73826004	0.84[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73826005	0.84[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73826006	0.84[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73826007	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73826008	0.84[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73826009	0.84[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73826010	0.84[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73826012	1.00[AMR][1000 genomes]
rs73826013	1.00[AMR][1000 genomes]
rs73826014	1.00[AMR][1000 genomes]
rs73826015	1.00[AMR][1000 genomes]
rs73826017	1.00[AMR][1000 genomes]
rs73826021	0.85[AMR][1000 genomes]
rs73826022	0.85[AMR][1000 genomes]
rs73826024	1.00[AMR][1000 genomes]
rs73826025	0.85[AMR][1000 genomes]
rs7620049	1.00[AMR][1000 genomes]
rs7627778	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7628073	1.00[EUR][1000 genomes]
rs7649677	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3328565	chr3:27991169-28915035	Weak transcription Enhancers Active TSS ZNF genes & repeats Flanking Active TSS Strong transcription Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	28 gene(s)	inside rSNPs	diseases
2	nsv876649	chr3:28126595-28718454	Enhancers Flanking Active TSS Strong transcription ZNF genes & repeats Weak transcription Bivalent Enhancer Active TSS Flanking Bivalent TSS/Enh Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	27 gene(s)	inside rSNPs	diseases
3	nsv876650	chr3:28427029-28613602	Enhancers Weak transcription Flanking Bivalent TSS/Enh ZNF genes & repeats Strong transcription Flanking Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
4	nsv1015015	chr3:28461972-28728494	Bivalent/Poised TSS Active TSS Enhancers Weak transcription Bivalent Enhancer Flanking Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
5	nsv916364	chr3:28468275-29146280	Enhancers Bivalent Enhancer Weak transcription ZNF genes & repeats Bivalent/Poised TSS Active TSS Flanking Active TSS Flanking Bivalent TSS/Enh Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
6	nsv590010	chr3:28469830-28727214	Enhancers Active TSS Weak transcription Flanking Bivalent TSS/Enh Bivalent Enhancer Strong transcription ZNF genes & repeats Flanking Active TSS Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:4 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:28479800-28509000	Weak transcription	Left Ventricle	heart
2	chr3:28483600-28497000	Weak transcription	Brain Substantia Nigra	brain
3	chr3:28483800-28497600	Weak transcription	Ovary	ovary
4	chr3:28492200-28499800	Weak transcription	Skeletal Muscle Male	skeletal muscle

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