The 2.0 version of rSNPBase

Variant report

Variant rs55965424
Chromosome Location chr19:21119735-21119736
allele A/G
Outlinks Ensembl   UCSC
Chromatin state (count:100 , 50 per page) page: 1 2
No. Chromosome Location Chromatin state Cell line Tissue
1 chr19:21106600-21129800 Weak transcription Stomach Mucosa stomach
2 chr19:21106800-21125600 Weak transcription Sigmoid Colon Sigmoid Colon
3 chr19:21106800-21128200 Weak transcription Primary T cells effector/memory enriched fromperipheralblood blood
4 chr19:21106800-21131000 Weak transcription Gastric stomach
5 chr19:21107000-21120400 Weak transcription Brain Inferior Temporal Lobe brain
6 chr19:21107000-21123000 Weak transcription Rectal Mucosa Donor 31 rectum
7 chr19:21107000-21124000 Weak transcription H1 Derived Neuronal Progenitor Cultured Cells ES cell derived
8 chr19:21107000-21125800 Weak transcription Psoas Muscle Psoas
9 chr19:21107000-21128000 Weak transcription Primary T cells fromperipheralblood blood
10 chr19:21107000-21133200 Weak transcription iPS DF 6.9 Cell Line embryonic stem cell
11 chr19:21107200-21123000 Weak transcription Primary T helper naive cells from peripheral blood blood
12 chr19:21107200-21124000 Weak transcription ES-I3 Cell Line embryonic stem cell
13 chr19:21107200-21125400 Weak transcription Primary T helper cells PMA-I stimulated --
14 chr19:21107200-21127200 Weak transcription Brain Angular Gyrus brain
15 chr19:21107200-21127400 Weak transcription Skeletal Muscle Male skeletal muscle
16 chr19:21107200-21132600 Weak transcription Brain Hippocampus Middle brain
17 chr19:21107200-21133800 ZNF genes & repeats H9 Derived Neuronal Progenitor Cultured Cells ES cell derived
18 chr19:21107400-21125600 Weak transcription Stomach Smooth Muscle stomach
19 chr19:21107400-21125600 Weak transcription HUVEC blood vessel
20 chr19:21107400-21128000 Weak transcription NHDF-Ad bronchial
21 chr19:21107400-21131600 Weak transcription H9 Cell Line embryonic stem cell
22 chr19:21107600-21127000 Weak transcription Fetal Kidney kidney
23 chr19:21107600-21133400 ZNF genes & repeats Primary hematopoietic stem cells G-CSF-mobilized Male --
24 chr19:21107800-21120600 Weak transcription iPS-18 Cell Line embryonic stem cell
25 chr19:21111800-21122600 Weak transcription Bone Marrow Derived Cultured Mesenchymal Stem Cells Bone marrow
26 chr19:21111800-21131000 Weak transcription NH-A brain
27 chr19:21112600-21124400 ZNF genes & repeats Monocytes-CD14+_RO01746 blood
28 chr19:21113600-21127200 ZNF genes & repeats Primary hematopoietic stem cells G-CSF-mobilized Female --
29 chr19:21113800-21126000 Strong transcription Dnd41 blood
30 chr19:21114000-21121200 Strong transcription hESC Derived CD56+ Ectoderm Cultured Cells ES cell derived
31 chr19:21114200-21120400 Weak transcription Foreskin Melanocyte Primary Cells skin01 Skin
32 chr19:21114400-21122200 Weak transcription HUES6 Cell Line embryonic stem cell
33 chr19:21114400-21132800 Weak transcription Colon Smooth Muscle Colon
34 chr19:21114800-21125600 Strong transcription HUES64 Cell Line embryonic stem cell
35 chr19:21115000-21120000 Weak transcription Foreskin Keratinocyte Primary Cells skin02 Skin
36 chr19:21115200-21120400 Weak transcription HSMM muscle
37 chr19:21116000-21119800 Weak transcription Pancreas Pancrea
38 chr19:21116000-21126200 Strong transcription hESC Derived CD56+ Mesoderm Cultured Cells ES cell derived
39 chr19:21116200-21121200 Strong transcription Foreskin Melanocyte Primary Cells skin03 Skin
40 chr19:21116400-21119800 Weak transcription Pancreatic Islets Pancreatic Islet
41 chr19:21116600-21133400 Weak transcription Rectal Smooth Muscle rectum
42 chr19:21116800-21126600 ZNF genes & repeats Primary hematopoietic stem cells blood
43 chr19:21117000-21120000 Strong transcription Primary B cells from cord blood blood
44 chr19:21117000-21121000 ZNF genes & repeats Fetal Brain Female brain
45 chr19:21117000-21124400 ZNF genes & repeats H9 Derived Neuron Cultured Cells ES cell derived
46 chr19:21117400-21120200 Weak transcription Brain Cingulate Gyrus brain
47 chr19:21117400-21121000 Strong transcription IMR90 fetal lung fibroblasts Cell Line lung
48 chr19:21117400-21121400 Strong transcription Fetal Muscle Trunk muscle
49 chr19:21117600-21126600 Strong transcription HUES48 Cell Line embryonic stem cell
50 chr19:21117800-21119800 Strong transcription Primary Natural Killer cells fromperipheralblood blood

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Last update: Aug 31, 2015