Variant report

Variant	rs55971843
Chromosome Location	chr7:86782538-86782539
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:206)
CpG islands
(count:61)
Chromatin interactive
region (count:16)
LncRNA
region (count:1)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

(count:206 , 50 per page) page: 1 2 3 4 5

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	ZBTB7A	chr7:86781833-86782546	ECC-1	luminal epithelium:	n/a	n/a
2	POLR2A	chr7:86781223-86782573	GM18951	blood:	n/a	n/a
3	POLR2A	chr7:86780891-86783057	U87	brain:	n/a	n/a
4	JUND	chr7:86781167-86782791	H1-hESC	embryonic stem cell:	n/a	chr7:86782537-86782549
5	POLR2A	chr7:86780737-86783963	IMR90	lung:	n/a	n/a
6	MYC	chr7:86780576-86782966	K562	blood:	n/a	n/a
7	POLR2A	chr7:86781201-86782656	PANC-1	pancreas:	n/a	n/a
8	CHD1	chr7:86781165-86782647	GM12878	blood:	n/a	n/a
9	STAT5A	chr7:86780906-86783177	K562	blood:	n/a	chr7:86782789-86782797
10	MXI1	chr7:86782401-86782818	K562	blood:	n/a	n/a
11	MAX	chr7:86781165-86782543	A549	lung:	n/a	n/a
12	POLR2A	chr7:86780800-86783072	GM12891	blood:	n/a	n/a
13	JUND	chr7:86780514-86783169	K562	blood:	n/a	chr7:86782537-86782549 chr7:86782864-86782875 chr7:86782868-86782876 chr7:86782866-86782878
14	TAF1	chr7:86781154-86782616	GM12878	blood:	n/a	n/a
15	UBTF	chr7:86781182-86783455	K562	blood:	n/a	n/a
16	STAT5A	chr7:86781284-86783064	GM12878	blood:	n/a	chr7:86782789-86782797
17	RCOR1	chr7:86780525-86782811	K562	blood:	n/a	n/a
18	RFX5	chr7:86781240-86782928	Hela-S3	cervix:	n/a	n/a
19	SIN3A	chr7:86781275-86782923	GM12878	blood:	n/a	n/a
20	MAX	chr7:86781174-86782543	K562	blood:	n/a	n/a
21	POLR2A	chr7:86781226-86782649	ECC-1	luminal epithelium:	n/a	n/a
22	POLR2A	chr7:86781192-86783195	HUVEC	blood vessel:	n/a	n/a
23	POLR2A	chr7:86781158-86782640	HCT-116	colon:	n/a	n/a
24	USF2	chr7:86781093-86782601	Hela-S3	cervix:	n/a	n/a
25	POLR2A	chr7:86780539-86783076	K562	blood:	n/a	n/a
26	YY1	chr7:86781231-86782642	K562	blood:	n/a	chr7:86782152-86782169
27	POLR2A	chr7:86780462-86784128	K562	blood:	n/a	n/a
28	POLR2A	chr7:86782367-86782665	HUVEC	blood vessel:	n/a	n/a
29	MAFF	chr7:86782447-86783095	K562	blood:	n/a	n/a
30	MAX	chr7:86781197-86782667	SK-N-SH	brain:	n/a	n/a
31	TAF1	chr7:86782478-86782894	Hela-S3	cervix:	n/a	n/a
32	CHD2	chr7:86780928-86782557	Hela-S3	cervix:	n/a	n/a
33	CEBPD	chr7:86781111-86783068	K562	blood:	n/a	n/a
34	POLR2A	chr7:86781062-86782809	HL-60	blood:	n/a	n/a
35	GTF2F1	chr7:86780485-86782876	Hela-S3	cervix:	n/a	n/a
36	POLR2A	chr7:86781340-86782601	GM12891	blood:	n/a	n/a
37	RCOR1	chr7:86782514-86783004	K562	blood:	n/a	n/a
38	CHD2	chr7:86780953-86783133	K562	blood:	n/a	n/a
39	MYC	chr7:86781244-86782860	NB4	blood:	n/a	n/a
40	RELA	chr7:86781268-86782688	GM18951	blood:	n/a	n/a
41	CHD1	chr7:86781688-86783260	H1-hESC	embryonic stem cell:	n/a	n/a
42	POLR2A	chr7:86780745-86783083	PBDE	blood:	n/a	n/a
43	SMARCC1	chr7:86781169-86782696	Hela-S3	cervix:	n/a	n/a
44	MAZ	chr7:86781009-86783086	IMR90	lung:	n/a	n/a
45	HCFC1	chr7:86781170-86782710	K562	blood:	n/a	n/a
46	POLR2A	chr7:86780794-86783128	SK-N-SH	brain:	n/a	n/a
47	POLR2A	chr7:86780814-86782684	K562	blood:	n/a	n/a
48	TCF7L2	chr7:86781240-86782944	Hela-S3	cervix:	n/a	chr7:86782677-86782687
49	MAX	chr7:86780946-86783061	Hela-S3	cervix:	n/a	n/a
50	POLR2A	chr7:86781248-86782549	MCF-7	breast:	n/a	n/a

(count:61 , 50 per page) page: 1 2

No.	Chromosome Location	Cell Line	Cell type	Cell Stage
1	chr7:86782513-86782563	GM19239	blood:	n/a
2	chr7:86782513-86782563	U87	brain:	n/a
3	chr7:86782513-86782563	SKMC	muscle:	n/a
4	chr7:86782513-86782563	Jurkat	blood:	n/a
5	chr7:86782513-86782563	HL-60	blood:	n/a
6	chr7:86782513-86782563	AoSMC	blood vessel:	n/a
7	chr7:86782513-86782563	BE2_C	brain:	n/a
8	chr7:86782513-86782563	GM12891	blood:	n/a
9	chr7:86782513-86782563	CMK	blood:	n/a
10	chr7:86782513-86782563	HRE	kidney:	n/a
11	chr7:86782513-86782563	GM12892	blood:	n/a
12	chr7:86782513-86782563	T-47D	breast:	n/a
13	chr7:86782513-86782563	HNPCEpiC	eye:	n/a
14	chr7:86782513-86782563	MCF-7	breast:	n/a
15	chr7:86782513-86782563	HCM	heart:	n/a
16	chr7:86782513-86782563	H1-hESC	embryonic stem cell:	embryo
17	chr7:86782513-86782563	HEK293	kidney:	embryo
18	chr7:86782513-86782563	HUVEC	blood vessel:	n/a
19	chr7:86782513-86782563	Hela-S3	cervix:	n/a
20	chr7:86782513-86782563	HRPEpiC	eye:	n/a
21	chr7:86782513-86782563	AG04449	skin:	fetal
22	chr7:86782513-86782563	AG10803	skin:	n/a
23	chr7:86782513-86782563	HCPEpiC	choroid plexus:	n/a
24	chr7:86782513-86782563	SK-N-SH	brain:	n/a
25	chr7:86782513-86782563	LNCaP	prostate:	n/a
26	chr7:86782513-86782563	HCF	heart:	n/a
27	chr7:86782513-86782563	NB4	blood:	n/a
28	chr7:86782513-86782563	HCT-116	colon:	n/a
29	chr7:86782513-86782563	HAEpiC	amniotic membrane:	n/a
30	chr7:86782513-86782563	K562	blood:	n/a
31	chr7:86782513-86782563	PFSK-1	brain:	n/a
32	chr7:86782513-86782563	SK-N-MC	brain:	n/a
33	chr7:86782513-86782563	HMEC	breast:	n/a
34	chr7:86782513-86782563	HPAEpiC	pulmonary alveolar:	n/a
35	chr7:86782513-86782563	AG09309	skin:	n/a
36	chr7:86782513-86782563	PrEC	prostate:	n/a
37	chr7:86782513-86782563	HIPEpiC	eye:	n/a
38	chr7:86782513-86782563	AG09319	gingival:	n/a
39	chr7:86782513-86782563	MCF10A-Er-Src	breast:	n/a
40	chr7:86782513-86782563	HEEpiC	esophagus:	n/a
41	chr7:86782513-86782563	SK-N-SH_RA	brain:	n/a
42	chr7:86782513-86782563	RPTEC	kidney:	n/a
43	chr7:86782513-86782563	PANC-1	pancreas:	n/a
44	chr7:86782513-86782563	ProgFib	skin:	n/a
45	chr7:86782513-86782563	A549	lung:	n/a
46	chr7:86782513-86782563	NHBE	bronchial:	n/a
47	chr7:86782513-86782563	NT2-D1	testis:	n/a
48	chr7:86782513-86782563	Caco-2	colon:	n/a
49	chr7:86782513-86782563	AG04450	lung:	fetal
50	chr7:86782513-86782563	BJ	skin:	n/a

(count:16 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr1:11968071..11969041-chr7:86781549..86782608,3	Hela-S3	cervix:
2	chr7:86571988..86574729-chr7:86782180..86784743,2	K562	blood:
3	chr7:86780600..86784245-chr7:86826808..86830083,3	K562	blood:
4	chr7:86687491..86690694-chr7:86779646..86784102,7	MCF-7	breast:
5	chr3:49448991..49449688-chr7:86782121..86782709,2	Hela-S3	cervix:
6	chr7:86566998..86572829-chr7:86779731..86785521,7	MCF-7	breast:
7	chr7:86781908..86782653-chr9:6757524..6758733,3	Hela-S3	cervix:
8	chr7:86736144..86740329-chr7:86781903..86788552,7	K562	blood:
9	chr7:86780653..86784932-chr7:86790317..86796236,8	MCF-7	breast:
10	chr7:86780355..86788679-chr7:86845137..86851399,15	MCF-7	breast:
11	chr7:86686484..86692984-chr7:86778376..86787938,22	K562	blood:
12	chr7:86686668..86692984-chr7:86780038..86786500,15	K562	blood:
13	chr5:151137664..151138245-chr7:86781839..86782780,2	Hela-S3	cervix:
14	chr7:86687563..86690226-chr7:86779393..86784314,7	MCF-7	breast:
15	chr7:86778653..86785496-chr7:86845746..86851349,11	MCF-7	breast:
16	chr7:86540771..86562582-chr7:86776173..86789890,50	K562	blood:

(count:1 , 50 per page) page: 1

No.	lncRNA name	Chromosome Location	lncRNA alias
1	lnc-C7orf23-1	chr7:86781618-86783009	NONHSAT121809

No data

Variant related genes	Relation type
DMTF1	TF binding region
ENSG00000224046	TF binding region
DMTF1	CpG island
ENSG00000224046	CpG island
ENSG00000177556	Chromatin interaction
ENSG00000199347	Chromatin interaction
ENSG00000261462	Chromatin interaction
ENSG00000200397	Chromatin interaction
ENSG00000107077	Chromatin interaction
ENSG00000067560	Chromatin interaction
ENSG00000135185	Chromatin interaction
ENSG00000145022	Chromatin interaction
ENSG00000164659	Chromatin interaction
ENSG00000135164	Chromatin interaction

Extended variants
information (count: 129 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:121)

rs_ID	r²[population]
rs10227182	0.86[EUR][1000 genomes]
rs10257058	0.86[EUR][1000 genomes]
rs1062274	1.00[AMR][1000 genomes];0.95[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs11541453	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs11971310	0.83[ASN][1000 genomes]
rs11971353	1.00[AMR][1000 genomes];0.95[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs11971364	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs11971394	1.00[AMR][1000 genomes];0.81[ASN][1000 genomes]
rs11974238	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs11975035	1.00[AMR][1000 genomes];0.95[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs11975795	0.90[EUR][1000 genomes]
rs11976564	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs11976589	0.83[AFR][1000 genomes]
rs11978231	0.83[ASN][1000 genomes]
rs11980996	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs11981115	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.91[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs11981403	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs11982198	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs11982256	0.85[AFR][1000 genomes];0.91[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs11983560	0.92[AFR][1000 genomes]
rs11983834	0.92[AFR][1000 genomes]
rs17161329	0.83[ASN][1000 genomes]
rs55661783	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs55665320	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs55743432	1.00[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs55813769	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs55817867	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs55823330	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs55848773	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs55856575	0.86[EUR][1000 genomes]
rs55878151	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs55891509	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs55908081	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs56056472	0.85[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs56092809	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs56209936	0.83[ASN][1000 genomes]
rs56226963	0.83[ASN][1000 genomes]
rs56314218	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs56397073	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs56404754	0.83[ASN][1000 genomes]
rs56936192	1.00[EUR][1000 genomes]
rs73202990	1.00[EUR][1000 genomes]
rs73203000	1.00[EUR][1000 genomes]
rs73204806	1.00[EUR][1000 genomes]
rs73204809	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73204813	0.83[ASN][1000 genomes]
rs73204816	0.83[ASN][1000 genomes]
rs73204817	0.83[ASN][1000 genomes]
rs73204819	0.83[ASN][1000 genomes]
rs73204824	0.83[ASN][1000 genomes]
rs73204825	0.83[ASN][1000 genomes]
rs73204885	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73204889	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73204893	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73204896	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73206906	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs73206908	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs73206909	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs73206910	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs73206913	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs73206922	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs73206924	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs73206940	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73206941	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs73206942	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs73206945	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs73206947	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs73206952	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs73206958	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs73206960	1.00[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs73206965	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs73206967	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs73206968	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs73206972	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs73206974	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs73206976	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs73206980	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs73206981	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs73206988	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs73206989	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs73206992	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs73206994	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs73206998	0.80[AFR][1000 genomes]
rs73207001	0.85[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs73207002	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs73208503	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs73208506	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs73208509	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs73208511	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs73208512	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs73208513	0.85[AFR][1000 genomes];1.00[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs73208515	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs73208516	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs73208519	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs73208521	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs73208528	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs73208532	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs73208535	0.85[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs73208540	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes];0.95[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs73208541	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes];0.95[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs73208542	1.00[AMR][1000 genomes];0.95[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs73208547	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes];0.95[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs73208550	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes];0.91[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs73208553	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes];0.95[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs73210216	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes];0.95[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs73210217	0.85[AFR][1000 genomes];1.00[AMR][1000 genomes];0.95[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs73210219	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes];0.95[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs73210221	1.00[AMR][1000 genomes];0.95[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs73210222	1.00[AMR][1000 genomes];0.95[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs73210226	1.00[AMR][1000 genomes];0.95[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs73210230	1.00[AMR][1000 genomes];0.95[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs73210233	1.00[AMR][1000 genomes];0.95[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs73210236	1.00[AMR][1000 genomes];0.95[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs73210240	0.95[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs73210247	1.00[AMR][1000 genomes];0.95[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs73210249	0.95[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs73210260	0.86[EUR][1000 genomes]
rs73210267	0.86[EUR][1000 genomes]
rs73212027	0.86[EUR][1000 genomes]
rs73212029	0.82[EUR][1000 genomes]
rs973044	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.89[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:8 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1025277	chr7:86299224-87206007	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Strong transcription Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	90 gene(s)	inside rSNPs	diseases
2	nsv538999	chr7:86299224-87206007	Flanking Active TSS Enhancers Weak transcription Active TSS Strong transcription Flanking Bivalent TSS/Enh ZNF genes & repeats Genic enhancers Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	90 gene(s)	inside rSNPs	diseases
3	nsv532147	chr7:86299225-87121975	Flanking Active TSS Strong transcription Enhancers Active TSS Weak transcription ZNF genes & repeats Flanking Bivalent TSS/Enh Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	85 gene(s)	inside rSNPs	diseases
4	nsv1015870	chr7:86490491-86802320	Enhancers Flanking Active TSS Bivalent/Poised TSS Strong transcription Active TSS Weak transcription Flanking Bivalent TSS/Enh Bivalent Enhancer Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	51 gene(s)	inside rSNPs	diseases
5	nsv539000	chr7:86490491-86802320	Strong transcription Weak transcription Enhancers Active TSS ZNF genes & repeats Flanking Active TSS Transcr. at gene 5' and 3' Genic enhancers Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	51 gene(s)	inside rSNPs	diseases
6	nsv527889	chr7:86496042-86832603	Enhancers Active TSS Weak transcription Strong transcription Genic enhancers Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	53 gene(s)	inside rSNPs	diseases
7	nsv1016761	chr7:86758544-86914152	Enhancers Active TSS Flanking Active TSS Strong transcription Weak transcription ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	57 gene(s)	inside rSNPs	diseases
8	nsv888676	chr7:86781423-86858824	Active TSS Strong transcription Flanking Active TSS Weak transcription ZNF genes & repeats Bivalent Enhancer Genic enhancers Enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	57 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:127 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:86780400-86783600	Active TSS	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
2	chr7:86780400-86783600	Active TSS	Fetal Lung	lung
3	chr7:86780400-86783600	Active TSS	K562	blood
4	chr7:86780400-86784200	Active TSS	Foreskin Fibroblast Primary Cells skin01	Skin
5	chr7:86780600-86783600	Active TSS	HUES48 Cell Line	embryonic stem cell
6	chr7:86780600-86783800	Active TSS	HUES64 Cell Line	embryonic stem cell
7	chr7:86780600-86783800	Active TSS	iPS-18 Cell Line	embryonic stem cell
8	chr7:86780600-86783800	Active TSS	Fetal Muscle Trunk	muscle
9	chr7:86780600-86784000	Active TSS	ES-I3 Cell Line	embryonic stem cell
10	chr7:86780600-86784000	Active TSS	H9 Cell Line	embryonic stem cell
11	chr7:86780600-86785200	Active TSS	NHLF	lung
12	chr7:86780600-86786000	Active TSS	Foreskin Fibroblast Primary Cells skin02	Skin
13	chr7:86780800-86782800	Active TSS	Brain Inferior Temporal Lobe	brain
14	chr7:86780800-86783000	Active TSS	iPS DF 19.11 Cell Line	embryonic stem cell
15	chr7:86780800-86783400	Active TSS	Primary T killer memory cells from peripheral blood	blood
16	chr7:86780800-86783600	Active TSS	Stomach Smooth Muscle	stomach
17	chr7:86780800-86783600	Active TSS	A549	lung
18	chr7:86780800-86783800	Active TSS	HUES6 Cell Line	embryonic stem cell
19	chr7:86780800-86783800	Active TSS	iPS-20b Cell Line	embryonic stem cell
20	chr7:86780800-86783800	Active TSS	Brain Dorsolateral Prefrontal Cortex	brain
21	chr7:86780800-86783800	Active TSS	Fetal Kidney	kidney
22	chr7:86780800-86784000	Active TSS	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
23	chr7:86780800-86784000	Active TSS	Fetal Stomach	stomach
24	chr7:86780800-86784200	Active TSS	Foreskin Melanocyte Primary Cells skin01	Skin
25	chr7:86780800-86784400	Active TSS	IMR90 fetal lung fibroblasts Cell Line	lung
26	chr7:86780800-86784400	Active TSS	iPS-15b Cell Line	embryonic stem cell
27	chr7:86780800-86784600	Active TSS	ES-WA7 Cell Line	embryonic stem cell
28	chr7:86780800-86784600	Active TSS	H1 Cell Line	embryonic stem cell
29	chr7:86780800-86785400	Active TSS	GM12878-XiMat	blood
30	chr7:86781000-86782800	Active TSS	Esophagus	oesophagus
31	chr7:86781000-86782800	Active TSS	Rectal Mucosa Donor 31	rectum
32	chr7:86781000-86783000	Active TSS	Colon Smooth Muscle	Colon
33	chr7:86781000-86783000	Active TSS	Pancreatic Islets	Pancreatic Islet
34	chr7:86781000-86783000	Active TSS	Placenta Amnion	Placenta Amnion
35	chr7:86781000-86783000	Active TSS	Sigmoid Colon	Sigmoid Colon
36	chr7:86781000-86783200	Active TSS	Cortex derived primary cultured neurospheres	brain
37	chr7:86781000-86783200	Active TSS	Fetal Brain Male	brain
38	chr7:86781000-86783200	Active TSS	Fetal Heart	heart
39	chr7:86781000-86783200	Active TSS	Hela-S3	cervix
40	chr7:86781000-86783400	Active TSS	Brain Angular Gyrus	brain
41	chr7:86781000-86783400	Active TSS	Duodenum Smooth Muscle	Duodenum
42	chr7:86781000-86783600	Active TSS	Breast Myoepithelial Primary Cells	Breast
43	chr7:86781000-86783600	Active TSS	Colonic Mucosa	Colon
44	chr7:86781000-86783600	Active TSS	Thymus	Thymus
45	chr7:86781000-86783600	Active TSS	HSMM	muscle
46	chr7:86781000-86783800	Active TSS	H9 Derived Neuron Cultured Cells	ES cell derived
47	chr7:86781000-86783800	Active TSS	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
48	chr7:86781000-86783800	Active TSS	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
49	chr7:86781000-86784000	Active TSS	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
50	chr7:86781000-86784000	Active TSS	Ovary	ovary

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