Variant report

Variant	rs73204809
Chromosome Location	chr7:86763368-86763369
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr7:86760460..86762904-chr7:86763165..86765693,2	MCF-7	breast:
2	chr7:86763222..86765945-chr7:86765955..86768293,2	K562	blood:
3	chr7:86746755..86750570-chr7:86763189..86766191,3	K562	blood:
4	chr7:86730349..86731920-chr7:86762742..86764645,2	K562	blood:

Extended variants
information (count: 117 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:106)

rs_ID	r²[population]
rs10227182	0.86[EUR][1000 genomes]
rs10257058	0.86[EUR][1000 genomes]
rs1062274	1.00[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs11541453	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs11971353	1.00[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs11971364	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs11971394	1.00[AMR][1000 genomes]
rs11974238	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs11975035	1.00[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs11975795	0.90[EUR][1000 genomes]
rs11976564	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs11980996	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs11981115	1.00[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs11981403	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs11982198	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs11982256	0.91[EUR][1000 genomes]
rs13234254	1.00[AFR][1000 genomes]
rs55661783	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs55665320	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs55743432	1.00[EUR][1000 genomes]
rs55813769	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs55817867	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs55823330	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs55848773	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs55856575	0.86[EUR][1000 genomes]
rs55878151	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs55891509	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs55908081	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs55971843	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs56056472	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs56092809	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs56314218	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs56397073	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs56936192	1.00[EUR][1000 genomes]
rs73202990	1.00[EUR][1000 genomes]
rs73203000	1.00[EUR][1000 genomes]
rs73204806	1.00[EUR][1000 genomes]
rs73204885	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73204889	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73204893	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73204896	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73206906	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73206908	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73206909	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73206910	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73206913	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73206922	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73206924	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73206940	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73206941	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73206942	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73206945	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73206947	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73206952	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73206958	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73206960	1.00[EUR][1000 genomes]
rs73206965	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73206967	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73206968	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73206972	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73206974	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73206976	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73206980	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73206981	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73206988	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73206989	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73206992	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73206994	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73207001	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73207002	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73208503	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73208506	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73208509	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73208511	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73208512	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73208513	1.00[EUR][1000 genomes]
rs73208515	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73208516	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73208519	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73208521	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73208528	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73208532	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73208535	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73208540	1.00[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs73208541	1.00[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs73208542	1.00[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs73208547	1.00[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs73208550	1.00[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs73208553	1.00[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs73210216	1.00[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs73210217	1.00[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs73210219	1.00[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs73210221	1.00[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs73210222	1.00[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs73210226	1.00[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs73210230	1.00[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs73210233	1.00[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs73210236	1.00[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs73210240	0.95[EUR][1000 genomes]
rs73210247	1.00[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs73210249	0.95[EUR][1000 genomes]
rs73210260	0.86[EUR][1000 genomes]
rs73210267	0.86[EUR][1000 genomes]
rs73212027	0.86[EUR][1000 genomes]
rs73212029	0.82[EUR][1000 genomes]
rs973044	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:11 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1025277	chr7:86299224-87206007	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Strong transcription Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	90 gene(s)	inside rSNPs	diseases
2	nsv538999	chr7:86299224-87206007	Flanking Active TSS Enhancers Weak transcription Active TSS Strong transcription Flanking Bivalent TSS/Enh ZNF genes & repeats Genic enhancers Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	90 gene(s)	inside rSNPs	diseases
3	nsv532147	chr7:86299225-87121975	Flanking Active TSS Strong transcription Enhancers Active TSS Weak transcription ZNF genes & repeats Flanking Bivalent TSS/Enh Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	85 gene(s)	inside rSNPs	diseases
4	nsv1015870	chr7:86490491-86802320	Enhancers Flanking Active TSS Bivalent/Poised TSS Strong transcription Active TSS Weak transcription Flanking Bivalent TSS/Enh Bivalent Enhancer Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	51 gene(s)	inside rSNPs	diseases
5	nsv539000	chr7:86490491-86802320	Strong transcription Weak transcription Enhancers Active TSS ZNF genes & repeats Flanking Active TSS Transcr. at gene 5' and 3' Genic enhancers Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	51 gene(s)	inside rSNPs	diseases
6	nsv527889	chr7:86496042-86832603	Enhancers Active TSS Weak transcription Strong transcription Genic enhancers Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	53 gene(s)	inside rSNPs	diseases
7	nsv1028503	chr7:86684514-86778047	Active TSS Weak transcription Enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
8	nsv1033834	chr7:86691235-86770796	Weak transcription Enhancers Flanking Active TSS Active TSS ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
9	nsv539002	chr7:86691235-86770796	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
10	nsv1023137	chr7:86725145-86767689	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
11	nsv1016761	chr7:86758544-86914152	Enhancers Active TSS Flanking Active TSS Strong transcription Weak transcription ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	57 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:5 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:86759000-86763400	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
2	chr7:86762000-86763400	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
3	chr7:86763000-86763400	Enhancers	K562	blood
4	chr7:86763200-86763600	Enhancers	GM12878-XiMat	blood
5	chr7:86763200-86763800	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links