Variant report

Variant	rs73204806
Chromosome Location	chr7:86760579-86760580
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr7:86704472..86706406-chr7:86758436..86761205,2	K562	blood:
2	chr7:86756031..86760604-chr7:86784730..86788894,5	K562	blood:
3	chr7:86758739..86761161-chr7:86775271..86777387,2	K562	blood:
4	chr7:86687259..86690064-chr7:86758649..86761060,2	MCF-7	breast:
5	chr7:86760460..86762904-chr7:86763165..86765693,2	MCF-7	breast:
6	chr7:86756889..86761980-chr7:86767271..86772567,7	K562	blood:
7	chr7:86757924..86761647-chr7:86780561..86782900,3	MCF-7	breast:

Variant related genes	Relation type
ENSG00000135164	Chromatin interaction
ENSG00000164659	Chromatin interaction
ENSG00000224046	Chromatin interaction

Extended variants
information (count: 116 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:105)

rs_ID	r²[population]
rs10227182	0.86[EUR][1000 genomes]
rs10257058	0.86[EUR][1000 genomes]
rs1062274	0.95[EUR][1000 genomes]
rs11541453	1.00[EUR][1000 genomes]
rs11971353	0.95[EUR][1000 genomes]
rs11971364	1.00[EUR][1000 genomes]
rs11974238	1.00[EUR][1000 genomes]
rs11975035	0.95[EUR][1000 genomes]
rs11975795	0.90[EUR][1000 genomes]
rs11976564	1.00[EUR][1000 genomes]
rs11980996	1.00[EUR][1000 genomes]
rs11981115	0.91[EUR][1000 genomes]
rs11981403	1.00[EUR][1000 genomes]
rs11982198	1.00[EUR][1000 genomes]
rs11982256	0.91[EUR][1000 genomes]
rs55661783	1.00[EUR][1000 genomes]
rs55665320	1.00[EUR][1000 genomes]
rs55743432	1.00[EUR][1000 genomes]
rs55813769	1.00[EUR][1000 genomes]
rs55817867	1.00[EUR][1000 genomes]
rs55823330	1.00[EUR][1000 genomes]
rs55848773	1.00[EUR][1000 genomes]
rs55856575	0.86[EUR][1000 genomes]
rs55878151	1.00[EUR][1000 genomes]
rs55891509	1.00[EUR][1000 genomes]
rs55908081	1.00[EUR][1000 genomes]
rs55971843	1.00[EUR][1000 genomes]
rs56056472	1.00[EUR][1000 genomes]
rs56092809	1.00[EUR][1000 genomes]
rs56314218	1.00[EUR][1000 genomes]
rs56397073	1.00[EUR][1000 genomes]
rs56936192	1.00[EUR][1000 genomes]
rs73202990	1.00[EUR][1000 genomes]
rs73203000	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73204809	1.00[EUR][1000 genomes]
rs73204885	1.00[EUR][1000 genomes]
rs73204889	1.00[EUR][1000 genomes]
rs73204893	1.00[EUR][1000 genomes]
rs73204896	1.00[EUR][1000 genomes]
rs73206906	1.00[EUR][1000 genomes]
rs73206908	1.00[EUR][1000 genomes]
rs73206909	1.00[EUR][1000 genomes]
rs73206910	1.00[EUR][1000 genomes]
rs73206913	1.00[EUR][1000 genomes]
rs73206922	1.00[EUR][1000 genomes]
rs73206924	1.00[EUR][1000 genomes]
rs73206940	1.00[EUR][1000 genomes]
rs73206941	1.00[EUR][1000 genomes]
rs73206942	1.00[EUR][1000 genomes]
rs73206945	1.00[EUR][1000 genomes]
rs73206947	1.00[EUR][1000 genomes]
rs73206952	1.00[EUR][1000 genomes]
rs73206958	1.00[EUR][1000 genomes]
rs73206960	1.00[EUR][1000 genomes]
rs73206965	1.00[EUR][1000 genomes]
rs73206967	1.00[EUR][1000 genomes]
rs73206968	1.00[EUR][1000 genomes]
rs73206972	1.00[EUR][1000 genomes]
rs73206974	1.00[EUR][1000 genomes]
rs73206976	1.00[EUR][1000 genomes]
rs73206980	1.00[EUR][1000 genomes]
rs73206981	1.00[EUR][1000 genomes]
rs73206988	1.00[EUR][1000 genomes]
rs73206989	1.00[EUR][1000 genomes]
rs73206992	1.00[EUR][1000 genomes]
rs73206994	1.00[EUR][1000 genomes]
rs73206998	0.88[ASN][1000 genomes]
rs73207001	1.00[EUR][1000 genomes]
rs73207002	1.00[EUR][1000 genomes]
rs73208503	1.00[EUR][1000 genomes]
rs73208506	1.00[EUR][1000 genomes]
rs73208509	1.00[EUR][1000 genomes]
rs73208511	1.00[EUR][1000 genomes]
rs73208512	1.00[EUR][1000 genomes]
rs73208513	1.00[EUR][1000 genomes]
rs73208515	1.00[EUR][1000 genomes]
rs73208516	1.00[EUR][1000 genomes]
rs73208519	1.00[EUR][1000 genomes]
rs73208521	1.00[EUR][1000 genomes]
rs73208528	1.00[EUR][1000 genomes]
rs73208532	1.00[EUR][1000 genomes]
rs73208535	1.00[EUR][1000 genomes]
rs73208540	0.95[EUR][1000 genomes]
rs73208541	0.95[EUR][1000 genomes]
rs73208542	0.95[EUR][1000 genomes]
rs73208547	0.95[EUR][1000 genomes]
rs73208550	0.91[EUR][1000 genomes]
rs73208553	0.95[EUR][1000 genomes]
rs73210216	0.95[EUR][1000 genomes]
rs73210217	0.95[EUR][1000 genomes]
rs73210219	0.95[EUR][1000 genomes]
rs73210221	0.95[EUR][1000 genomes]
rs73210222	0.95[EUR][1000 genomes]
rs73210226	0.95[EUR][1000 genomes]
rs73210230	0.95[EUR][1000 genomes]
rs73210233	0.95[EUR][1000 genomes]
rs73210236	0.95[EUR][1000 genomes]
rs73210240	0.95[EUR][1000 genomes]
rs73210247	0.95[EUR][1000 genomes]
rs73210249	0.95[EUR][1000 genomes]
rs73210260	0.86[EUR][1000 genomes]
rs73210267	0.86[EUR][1000 genomes]
rs73212027	0.86[EUR][1000 genomes]
rs73212029	0.82[EUR][1000 genomes]
rs973044	1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:11 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1025277	chr7:86299224-87206007	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Strong transcription Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	90 gene(s)	inside rSNPs	diseases
2	nsv538999	chr7:86299224-87206007	Flanking Active TSS Enhancers Weak transcription Active TSS Strong transcription Flanking Bivalent TSS/Enh ZNF genes & repeats Genic enhancers Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	90 gene(s)	inside rSNPs	diseases
3	nsv532147	chr7:86299225-87121975	Flanking Active TSS Strong transcription Enhancers Active TSS Weak transcription ZNF genes & repeats Flanking Bivalent TSS/Enh Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	85 gene(s)	inside rSNPs	diseases
4	nsv1015870	chr7:86490491-86802320	Enhancers Flanking Active TSS Bivalent/Poised TSS Strong transcription Active TSS Weak transcription Flanking Bivalent TSS/Enh Bivalent Enhancer Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	51 gene(s)	inside rSNPs	diseases
5	nsv539000	chr7:86490491-86802320	Strong transcription Weak transcription Enhancers Active TSS ZNF genes & repeats Flanking Active TSS Transcr. at gene 5' and 3' Genic enhancers Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	51 gene(s)	inside rSNPs	diseases
6	nsv527889	chr7:86496042-86832603	Enhancers Active TSS Weak transcription Strong transcription Genic enhancers Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	53 gene(s)	inside rSNPs	diseases
7	nsv1028503	chr7:86684514-86778047	Active TSS Weak transcription Enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
8	nsv1033834	chr7:86691235-86770796	Weak transcription Enhancers Flanking Active TSS Active TSS ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
9	nsv539002	chr7:86691235-86770796	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
10	nsv1023137	chr7:86725145-86767689	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
11	nsv1016761	chr7:86758544-86914152	Enhancers Active TSS Flanking Active TSS Strong transcription Weak transcription ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	57 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:9 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:86759000-86763200	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
2	chr7:86759000-86763400	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
3	chr7:86759200-86760600	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
4	chr7:86759200-86760600	Enhancers	iPS-20b Cell Line	embryonic stem cell
5	chr7:86759400-86761000	Enhancers	HUES48 Cell Line	embryonic stem cell
6	chr7:86760000-86760600	Enhancers	GM12878-XiMat	blood
7	chr7:86760200-86761200	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
8	chr7:86760400-86760800	Weak transcription	HUES64 Cell Line	embryonic stem cell
9	chr7:86760400-86763000	Weak transcription	K562	blood

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