Variant report

Variant	rs55972477
Chromosome Location	chr14:38055517-38055518
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:0)
CpG islands
(count:0)
Chromatin interactive
region (count:16)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

No data

(count:16 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr14:37704717..37707352-chr14:38053028..38056563,4	MCF-7	breast:
2	chr14:38054286..38055806-chr14:38336745..38339551,2	MCF-7	breast:
3	chr14:37749616..37751782-chr14:38055400..38058293,2	MCF-7	breast:
4	chr14:38013794..38017816-chr14:38049871..38055560,6	MCF-7	breast:
5	chr14:38054348..38056983-chr16:85495948..85497819,2	MCF-7	breast:
6	chr11:62607623..62609133-chr14:38052681..38055666,2	MCF-7	breast:
7	chr14:37709149..37730989-chr14:38048141..38067789,135	MCF-7	breast:
8	chr14:38023383..38025089-chr14:38055151..38056886,2	MCF-7	breast:
9	chr14:38052799..38056645-chr14:38110576..38115505,4	MCF-7	breast:
10	chr14:38010426..38020494-chr14:38050537..38062032,33	MCF-7	breast:
11	chr14:37708906..37733371-chr14:38048131..38068843,170	MCF-7	breast:
12	chr11:65264612..65267517-chr14:38054268..38055972,2	MCF-7	breast:
13	chr14:37732063..37736405-chr14:38055420..38059808,4	MCF-7	breast:
14	chr14:38055176..38057848-chr3:62188457..62190733,2	MCF-7	breast:
15	chr11:104787117..104789593-chr14:38053367..38055956,2	MCF-7	breast:
16	chr14:38053183..38055954-chr14:38113662..38116528,3	MCF-7	breast:

No data

Variant related genes	Relation type
ENSG00000235505	Chromatin interaction
ENSG00000251562	Chromatin interaction
ENSG00000151338	Chromatin interaction
ENSG00000270117	Chromatin interaction
ENSG00000133316	Chromatin interaction

Extended variants
information (count: 133 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:121)

rs_ID	r²[population]
rs12147674	1.00[AFR][1000 genomes]
rs12878124	1.00[AFR][1000 genomes]
rs12878633	1.00[AFR][1000 genomes]
rs12878710	1.00[AFR][1000 genomes]
rs12878846	1.00[AFR][1000 genomes]
rs12879149	1.00[AFR][1000 genomes]
rs12879319	1.00[AFR][1000 genomes]
rs12882123	1.00[AFR][1000 genomes]
rs12882687	1.00[AFR][1000 genomes]
rs12882773	1.00[AFR][1000 genomes]
rs12887471	1.00[AFR][1000 genomes]
rs12887758	1.00[AFR][1000 genomes]
rs12888451	1.00[AFR][1000 genomes]
rs12889687	1.00[AFR][1000 genomes]
rs12889859	1.00[AFR][1000 genomes]
rs12890074	1.00[AFR][1000 genomes]
rs12890845	1.00[AFR][1000 genomes]
rs12893402	1.00[AFR][1000 genomes]
rs12894394	1.00[AFR][1000 genomes]
rs12896790	1.00[AFR][1000 genomes]
rs12897309	1.00[AFR][1000 genomes]
rs17106861	0.83[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs17179274	1.00[AFR][1000 genomes];0.88[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs17179281	0.88[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs17179609	1.00[AFR][1000 genomes]
rs17768440	1.00[AFR][1000 genomes];0.88[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs17768654	1.00[AFR][1000 genomes]
rs33984772	1.00[AFR][1000 genomes];0.94[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs34025516	1.00[AFR][1000 genomes]
rs34043056	1.00[AFR][1000 genomes]
rs34069628	1.00[AFR][1000 genomes]
rs34184341	1.00[AFR][1000 genomes]
rs34242177	1.00[AFR][1000 genomes];0.89[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs34256053	1.00[AFR][1000 genomes]
rs34265999	1.00[AFR][1000 genomes]
rs34273412	1.00[AFR][1000 genomes]
rs34306117	1.00[AFR][1000 genomes]
rs34338696	1.00[AFR][1000 genomes]
rs34434018	1.00[AFR][1000 genomes]
rs34450997	1.00[AFR][1000 genomes]
rs34469876	1.00[AFR][1000 genomes]
rs34496783	1.00[AFR][1000 genomes]
rs34516219	1.00[AFR][1000 genomes]
rs34543736	1.00[AFR][1000 genomes]
rs34548330	1.00[AFR][1000 genomes]
rs34567961	1.00[AFR][1000 genomes]
rs34586390	1.00[AFR][1000 genomes]
rs34680819	1.00[AFR][1000 genomes]
rs34747911	1.00[AFR][1000 genomes]
rs34813864	1.00[AFR][1000 genomes]
rs34830744	1.00[AFR][1000 genomes]
rs34886614	1.00[AFR][1000 genomes]
rs35030337	1.00[AFR][1000 genomes]
rs35074434	1.00[AFR][1000 genomes]
rs35082276	1.00[AFR][1000 genomes]
rs35110244	1.00[AFR][1000 genomes]
rs35111962	1.00[AFR][1000 genomes]
rs35141852	1.00[AFR][1000 genomes]
rs35169093	1.00[AFR][1000 genomes]
rs35190835	1.00[AFR][1000 genomes]
rs35294705	1.00[AFR][1000 genomes]
rs35310265	1.00[AFR][1000 genomes]
rs35319231	1.00[AFR][1000 genomes]
rs35330350	1.00[AFR][1000 genomes]
rs35333548	1.00[AFR][1000 genomes]
rs35347282	1.00[AFR][1000 genomes];0.94[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs35350493	1.00[AFR][1000 genomes]
rs35383091	1.00[AFR][1000 genomes]
rs35393462	1.00[AFR][1000 genomes]
rs35413274	1.00[AFR][1000 genomes]
rs35427651	1.00[AFR][1000 genomes]
rs35435404	1.00[AFR][1000 genomes]
rs35438963	1.00[AFR][1000 genomes]
rs35441075	1.00[AFR][1000 genomes]
rs35470726	1.00[AFR][1000 genomes]
rs35505269	1.00[AFR][1000 genomes]
rs35536208	1.00[AFR][1000 genomes]
rs35610918	1.00[AFR][1000 genomes]
rs35699962	1.00[AFR][1000 genomes]
rs35706871	1.00[AFR][1000 genomes]
rs35748911	1.00[AFR][1000 genomes]
rs35791659	1.00[AFR][1000 genomes]
rs35802121	1.00[AFR][1000 genomes]
rs35852338	1.00[AFR][1000 genomes]
rs35891950	1.00[AFR][1000 genomes]
rs35926829	1.00[AFR][1000 genomes]
rs35926928	1.00[AFR][1000 genomes]
rs35942161	1.00[AFR][1000 genomes]
rs36004540	1.00[AFR][1000 genomes]
rs36044547	1.00[AFR][1000 genomes]
rs36074427	1.00[AFR][1000 genomes]
rs36189403	1.00[AFR][1000 genomes]
rs36194865	1.00[AFR][1000 genomes]
rs55734217	1.00[AFR][1000 genomes]
rs56223359	1.00[AFR][1000 genomes]
rs71405800	1.00[AFR][1000 genomes]
rs71407707	1.00[AFR][1000 genomes]
rs71407708	1.00[AFR][1000 genomes]
rs71407709	1.00[AFR][1000 genomes]
rs71407710	1.00[AFR][1000 genomes]
rs71407711	1.00[AFR][1000 genomes]
rs71407712	1.00[AFR][1000 genomes]
rs71407716	1.00[AFR][1000 genomes]
rs71407717	1.00[AFR][1000 genomes]
rs71407718	1.00[AFR][1000 genomes]
rs71407720	1.00[AFR][1000 genomes]
rs71407721	1.00[AFR][1000 genomes]
rs71407722	1.00[AFR][1000 genomes]
rs71407723	1.00[AFR][1000 genomes]
rs71407724	1.00[AFR][1000 genomes]
rs71407725	1.00[AFR][1000 genomes]
rs71407726	1.00[AFR][1000 genomes]
rs71407727	1.00[AFR][1000 genomes]
rs71407728	1.00[AFR][1000 genomes]
rs71407729	1.00[AFR][1000 genomes]
rs71407730	1.00[AFR][1000 genomes]
rs71407731	1.00[AFR][1000 genomes]
rs71407732	1.00[AFR][1000 genomes]
rs71407733	1.00[AFR][1000 genomes]
rs71407734	1.00[AFR][1000 genomes]
rs71407741	1.00[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:12 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv530038	chr14:37590543-38336191	Weak transcription Enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh Active TSS Bivalent Enhancer Bivalent/Poised TSS Flanking Active TSS Strong transcription Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	58 gene(s)	inside rSNPs	diseases
2	nsv826923	chr14:38017619-38108645	Bivalent/Poised TSS Bivalent Enhancer Flanking Active TSS Flanking Bivalent TSS/Enh Weak transcription Active TSS Enhancers Genic enhancers ZNF genes & repeats Strong transcription Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	45 gene(s)	inside rSNPs	diseases
3	nsv832772	chr14:38030300-38225921	Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS Weak transcription Flanking Active TSS Enhancers ZNF genes & repeats Strong transcription Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	49 gene(s)	inside rSNPs	diseases
4	nsv901642	chr14:38041870-38081005	Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Active TSS Flanking Active TSS Enhancers Weak transcription Strong transcription ZNF genes & repeats Transcr. at gene 5' and 3' Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	45 gene(s)	inside rSNPs	diseases
5	nsv901643	chr14:38047789-38081005	Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS Weak transcription Active TSS Flanking Active TSS Genic enhancers Strong transcription Enhancers Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	45 gene(s)	inside rSNPs	diseases
6	nsv901644	chr14:38049107-38064738	Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Enhancers Flanking Active TSS Active TSS Weak transcription Transcr. at gene 5' and 3' ZNF genes & repeats Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	41 gene(s)	inside rSNPs	diseases
7	nsv901645	chr14:38051035-38064215	Bivalent Enhancer Bivalent/Poised TSS Active TSS Weak transcription Flanking Bivalent TSS/Enh Flanking Active TSS Enhancers Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	39 gene(s)	inside rSNPs	diseases
8	nsv901646	chr14:38051035-38081005	Flanking Bivalent TSS/Enh Flanking Active TSS Bivalent Enhancer Bivalent/Poised TSS Weak transcription Active TSS Enhancers Strong transcription Transcr. at gene 5' and 3' ZNF genes & repeats Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	44 gene(s)	inside rSNPs	diseases
9	nsv901647	chr14:38052110-38064738	Bivalent Enhancer Flanking Bivalent TSS/Enh Active TSS Bivalent/Poised TSS Flanking Active TSS Enhancers ZNF genes & repeats Weak transcription Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	40 gene(s)	inside rSNPs	diseases
10	nsv901648	chr14:38052110-38065813	Active TSS Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh Weak transcription Enhancers Flanking Active TSS ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	42 gene(s)	inside rSNPs	diseases
11	nsv916985	chr14:38052347-38838551	Bivalent Enhancer Enhancers Weak transcription Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3' Active TSS ZNF genes & repeats Flanking Active TSS Strong transcription Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	59 gene(s)	inside rSNPs	diseases
12	nsv901649	chr14:38053334-38065813	Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh Flanking Active TSS Active TSS Weak transcription Enhancers ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	42 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:25 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr14:38052800-38055600	Bivalent Enhancer	Fetal Lung	lung
2	chr14:38053000-38057600	Weak transcription	Gastric	stomach
3	chr14:38053400-38062800	Weak transcription	Hela-S3	cervix
4	chr14:38053600-38056200	Enhancers	HepG2	liver
5	chr14:38054000-38056400	Bivalent Enhancer	ES-UCSF4 Cell Line	embryonic stem cell
6	chr14:38054200-38055800	Bivalent/Poised TSS	Rectal Mucosa Donor 29	rectum
7	chr14:38054200-38056800	Bivalent Enhancer	HUES64 Cell Line	embryonic stem cell
8	chr14:38054400-38055800	Bivalent Enhancer	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
9	chr14:38054600-38055600	Bivalent Enhancer	iPS DF 19.11 Cell Line	embryonic stem cell
10	chr14:38054600-38055800	Bivalent Enhancer	H1 Cell Line	embryonic stem cell
11	chr14:38054600-38056800	Bivalent Enhancer	iPS-18 Cell Line	embryonic stem cell
12	chr14:38054800-38055600	Bivalent Enhancer	HUES6 Cell Line	embryonic stem cell
13	chr14:38054800-38056800	Bivalent Enhancer	HUES48 Cell Line	embryonic stem cell
14	chr14:38054800-38057200	Weak transcription	Lung	lung
15	chr14:38055200-38055800	Bivalent Enhancer	H9 Cell Line	embryonic stem cell
16	chr14:38055200-38056000	Flanking Active TSS	A549	lung
17	chr14:38055200-38056800	Bivalent Enhancer	iPS-20b Cell Line	embryonic stem cell
18	chr14:38055400-38055600	Flanking Bivalent TSS/Enh	Fetal Intestine Small	intestine
19	chr14:38055400-38055600	Bivalent Enhancer	Stomach Mucosa	stomach
20	chr14:38055400-38055800	Bivalent Enhancer	ES-I3 Cell Line	embryonic stem cell
21	chr14:38055400-38055800	Bivalent Enhancer	Fetal Intestine Large	intestine
22	chr14:38055400-38056200	Bivalent Enhancer	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
23	chr14:38055400-38056600	Enhancers	Liver	Liver
24	chr14:38055400-38056600	Bivalent/Poised TSS	Rectal Mucosa Donor 31	rectum
25	chr14:38055400-38056800	Bivalent Enhancer	iPS-15b Cell Line	embryonic stem cell

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